* using log directory ‘/Users/ripley/R/packages/tests-devel/poems.Rcheck’
* using R Under development (unstable) (2023-12-19 r85705)
* using platform: aarch64-apple-darwin23.2.0
* R was compiled by
    Apple clang version 15.0.0 (clang-1500.1.0.2.5)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Sonoma 14.2
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘poems/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘poems’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘poems’ can be installed ... [14s/14s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/11s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [16s/16s]
 [16s/16s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(poems)
  > 
  > test_check("poems")
  [ FAIL 12 | WARN 1 | SKIP 0 | PASS 1049 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_dispersal_friction.R:90:3'): distance multiplier calculations ──
  distance_multipliers[[1]] not equal to rep(1, nrow(dispersal_indices)).
  12/220 mismatches (average diff: NaN)
  [1]   NaN - 1 == NaN
  [14]  NaN - 1 == NaN
  [30]  NaN - 1 == NaN
  [46]  NaN - 1 == NaN
  [58]  NaN - 1 == NaN
  [73]  NaN - 1 == NaN
  [90]  NaN - 1 == NaN
  [106] NaN - 1 == NaN
  [119] NaN - 1 == NaN
  ...
  ── Failure ('test_dispersal_friction.R:95:3'): distance multiplier calculations ──
  distance_multipliers[[2]][other_indices] not equal to rep(Inf, length(other_indices)).
  1/9 mismatches
  [1] NaN - Inf == NaN
  ── Failure ('test_dispersal_friction.R:129:3'): distance multiplier calculations ──
  distance_multipliers2[[2]][other_indices] not equal to rep(Inf, length(other_indices)).
  1/9 mismatches
  [1] NaN - Inf == NaN
  ── Failure ('test_dispersal_friction.R:153:3'): distance multiplier calculations ──
  all(...) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test_dispersal_friction.R:154:3'): distance multiplier calculations ──
  all(...) is not TRUE
  
  `actual`:   <NA>
  `expected`: TRUE
  ── Failure ('test_dispersal_generator.R:82:3'): calculate distance data ────────
  `dispersal_gen$calculate_distance_data(...)` did not throw an error.
  ── Failure ('test_dispersal_generator.R:88:3'): calculate distance data ────────
  ...[] not equal to `distance_data`.
  Component "distance_class": 'is.NA' value mismatch: 12 in current 0 in target
  ── Failure ('test_dispersal_generator.R:91:3'): calculate distance data ────────
  all(...) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test_dispersal_generator.R:299:3'): calculate dispersals with dispersal friction ──
  dispersal_gen$dispersal_data[[1]]$dispersal_rate not equal to expected_dispersal_data$dispersal_rate.
  Lengths differ: 94 is not 102
  ── Failure ('test_dispersal_generator.R:313:3'): cloning and generation ────────
  dim(dispersal_clone$dispersal_data[[1]]) not equal to c(164, 5).
  1/2 mismatches
  [1] 176 - 164 == 12
  ── Failure ('test_dispersal_generator.R:329:3'): cloning and generation ────────
  dim(dispersal_clone$dispersal_data[[1]]) not equal to c(228, 5).
  1/2 mismatches
  [1] 240 - 228 == 12
  ── Failure ('test_population_dispersal_function.R:600:3'): density dependent dispersal ──
  dispersal_function(...) not equal to `expected_stage_abundance`.
  2/21 mismatches (average diff: 5)
  [2]  8 -  3 ==  5
  [8] 11 - 16 == -5
  
  [ FAIL 12 | WARN 1 | SKIP 0 | PASS 1049 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [56s/53s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/ripley/R/packages/tests-devel/poems.Rcheck/00check.log’
for details.

      160.81 real       151.62 user        11.71 sys