* using log directory ‘/Users/ripley/R/packages/tests-devel/ondisc.Rcheck’
* using R Under development (unstable) (2026-07-14 r90254)
* using platform: aarch64-apple-darwin25.5.0
* R was compiled by
    Apple clang version 21.0.0 (clang-2100.1.1.101)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.5.2
* using session charset: UTF-8
* current time: 2026-07-14 19:55:51 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘ondisc/DESCRIPTION’ ... OK
* this is package ‘ondisc’ version ‘1.3.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ondisc’ can be installed ... [14s/15s] OK
* used C++ compiler: ‘Apple clang version 21.0.0 (clang-2100.1.1.101)’
* used SDK: ‘MacOSX26.5.sdk’
* checking installed package size ... INFO
  installed size is 12.3Mb
  sub-directories of 1Mb or more:
    libs  11.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... INFO
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(ondisc)
  > 
  > test_check("ondisc")
  [1] "seed: 205621"
  [1] "Generating example dataset 1."
  [1] "Testing import from cellranger for dataset 1"
  Round 1/2 processing of the input files.
  	Processing file 1 of 2.
  	Processing file 2 of 2.
  Round 2/2 processing of the input files.
  	Processing file 1 of 2. Computing cellwise covariates. Writing to disk.
  	Processing file 2 of 2. Computing cellwise covariates. Writing to disk.
  Saving _problems/test-import_from_cellranger_v2-130.R
  [1] "Generating example dataset 1."
  [1] "Testing import from R matrix for dataset 1"
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 168 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-import_from_cellranger_v2.R:130:11'): import data from cellranger v2 ──
  Error in `base::colSums(x, na.rm = na.rm, dims = dims, ...)`: 'x' must be an array of at least two dimensions
  Backtrace:
      ▆
   1. ├─Matrix::colSums(...) at test-import_from_cellranger_v2.R:130:11
   2. └─Matrix::colSums(...)
   3.   └─base::colSums(x, na.rm = na.rm, dims = dims, ...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 168 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/ripley/R/packages/tests-devel/ondisc.Rcheck/00check.log’
for details.

       44.71 real        34.41 user         8.64 sys