* using log directory ‘/Users/ripley/R/packages/tests-devel/msma.Rcheck’ * using R Under development (unstable) (2026-11-03 r90835) * using platform: aarch64-apple-darwin27.2.0 * R was compiled by Apple clang version 21.0.0 (clang-2100.4.1.1) GNU Fortran (GCC) 14.2.0 * running under: macOS Golden Gate 27.2 * using session charset: UTF-8 * current time: 2026-11-07 07:41:45 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘msma/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘msma’ version ‘5.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘msma’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(msma) > test_check("msma") Saving _problems/test-v5-prediction-baseline-17.R Saving _problems/test-v5-prediction-baseline-34.R Saving _problems/test-v5-prediction-baseline-57.R Saving _problems/test-v5-prediction-baseline-91.R Saving _problems/test-v5-prediction-baseline-113.R Saving _problems/test-v5-prediction-baseline-114.R Saving _problems/test-v5-prediction-baseline-132.R Saving _problems/test-v5-prediction-baseline-133.R Saving _problems/test-v5-prediction-baseline-151.R Saving _problems/test-v5-prediction-baseline-169.R Saving _problems/test-v5-prediction-baseline-189.R Saving _problems/test-v5-prediction-fitted-16.R Saving _problems/test-v5-prediction-fitted-20.R [ FAIL 13 | WARN 0 | SKIP 3 | PASS 989 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • Source-tree documentation files are not available. (3): 'test-v5-prediction-documentation.R:37:5', 'test-v5-prediction-documentation.R:82:5', 'test-v5-prediction-documentation.R:160:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-v5-prediction-baseline.R:17:3'): legacy PCA prediction with scaling TRUE matches baseline ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.452876183536078225 - 0.452876183536077837 [1] [2] -0.079225667276012976 - -0.079225667276013267 [2] [3] -0.789884115690939637 - -0.789884115690939526 [3] [4] 0.442155505782371505 - 0.442155505782371006 [4] [5] -0.115007809220551552 - -0.115007809220551316 [5] [6] 0.661078552168546940 - 0.661078552168547051 [6] [7] -0.502318791389847807 - -0.502318791389847030 [7] [8] -0.190689619388338644 - -0.190689619388338866 [8] [9] -0.458052745239417247 - -0.458052745239416692 [9] [10] 0.481785007943845656 | 0.481785007943845656 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -1.18325976537039779 - -1.18325976537039734 [1] [2] 0.28239815369849397 | 0.28239815369849397 [2] [3] 2.11512769491940000 | 2.11512769491940000 [3] [4] -1.09529897858729663 | -1.09529897858729663 [4] [5] 0.28046078205544794 - 0.28046078205544778 [5] [6] -1.87853039058592364 - -1.87853039058592319 [6] [7] 1.21743150441035719 - 1.21743150441035697 [7] [8] 0.56608881968930924 - 0.56608881968930935 [8] [9] 1.16058533493207072 - 1.16058533493207028 [9] [10] -1.31920442448685149 | -1.31920442448685149 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:34:3'): legacy PCA prediction with scaling FALSE matches baseline ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.130399884531725380 - -0.130399884531725629 [1] [2] -0.162578308356472384 - -0.162578308356472218 [2] [3] -0.895494599351058018 - -0.895494599351058129 [3] [4] 0.324260603446073548 - 0.324260603446073270 [4] [5] 0.371899380690175363 - 0.371899380690175474 [5] [6] 0.069972375597097666 - 0.069972375597097874 [6] [7] -0.281724115657135399 - -0.281724115657135454 [7] [8] -1.465732087681434148 - -1.465732087681434592 [8] [9] -0.005570285708658856 - -0.005570285708658917 [9] [10] -0.995315060268985863 - -0.995315060268985752 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -0.378709057563207940 - -0.378709057563207441 [1] [2] -0.242961100002731856 - -0.242961100002732161 [2] [3] 1.640784472210377487 - 1.640784472210377931 [3] [4] -1.192075063031929449 - -1.192075063031929005 [4] [5] -0.455474737519725781 - -0.455474737519725670 [5] [6] 0.626015205420247578 - 0.626015205420247800 [6] [7] 0.219575583256993279 - 0.219575583256993251 [7] [8] -0.801378179166684190 - -0.801378179166683857 [8] [9] -0.528012250226710833 - -0.528012250226710611 [9] [10] 1.783021968961968629 - 1.783021968961969295 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:57:3'): legacy PLS X and Y prediction matches baseline ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.523094306526272868 - -0.523094306526273090 [1] [2] -0.176422825399348698 - -0.176422825399348449 [2] [3] -0.459723170360351152 - -0.459723170360350597 [3] [4] -1.053508918204909550 - -1.053508918204908884 [4] [5] -0.567187110109685810 - -0.567187110109685477 [5] [6] 0.180976738516998720 - 0.180976738516999358 [6] [7] -0.602980222901095542 - -0.602980222901094876 [7] [8] -0.449003780772402217 - -0.449003780772401884 [8] [9] 0.421202099221768711 - 0.421202099221769433 [9] [10] 0.194288616598771502 - 0.194288616598771446 [10] ... ... ... and 38 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.311818261469395230 - 0.311818261469395508 [1] [2] 0.440586777179494071 - 0.440586777179493905 [2] [3] -0.206728141049157904 - -0.206728141049157987 [3] [4] 1.056684088763764962 - 1.056684088763764739 [4] [5] -0.668210326243253716 - -0.668210326243253494 [5] [6] -0.696245784114051136 - -0.696245784114051469 [6] [7] 0.459908995907266360 - 0.459908995907265861 [7] [8] 1.004504989394756631 - 1.004504989394756409 [8] [9] 1.004356131603069802 - 1.004356131603070468 [9] [10] -0.131624596433664476 - -0.131624596433665059 [10] ... ... ... and 6 more ... actual$Y[[1]] | expected$Y[[1]] [1] 1.202706738567212330 - 1.202706738567212774 [1] [2] 1.107076683355466606 - 1.107076683355467273 [2] [3] 0.853082883333361797 - 0.853082883333362241 [3] [4] -0.864102628356017477 - -0.864102628356016700 [4] [5] 1.073773392113208436 - 1.073773392113208658 [5] [6] 0.083172261170427766 - 0.083172261170427808 [6] [7] 0.909439004705059229 - 0.909439004705058895 [7] [8] 0.642609122942905842 - 0.642609122942906064 [8] [9] -0.372637401187600747 - -0.372637401187601136 [9] [10] -0.355134329716218944 - -0.355134329716219332 [10] ... ... ... and 22 more ... actual$sbY[[1]] | expected$sbY[[1]] [1] -0.67440281496621413 - -0.67440281496621490 [1] [2] -0.47660739409271630 - -0.47660739409271669 [2] [3] 0.17019238494876179 - 0.17019238494876143 [3] [4] 0.88201824052136468 | 0.88201824052136468 [4] [5] 0.37789182440954622 - 0.37789182440954583 [5] [6] -0.69097149641876920 | -0.69097149641876920 [6] [7] -0.81991968858760922 - -0.81991968858760944 [7] [8] 0.25222626095032097 - 0.25222626095032064 [8] [9] -1.15619478045684487 - -1.15619478045684532 [9] [10] -1.20785786543765750 - -1.20785786543765816 [10] ... ... ... and 6 more ... ── Failure ('test-v5-prediction-baseline.R:91:3'): single-row legacy prediction matches baseline and stays finite ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] vs expected$X[[1]] [,1] [,2] [,3] [,4] [,5] [,6] - actual$X[[1]][1, ] 1.064860 -1.064860 1.064860 -1.064860 -1.064860 -1.064860 + expected$X[[1]][1, ] 1.094187 -1.094187 1.094187 -1.094187 -1.094187 -1.094187 `actual$sbX[[1]]`: -1.30906862902939469 1.17240779583392229 `expected$sbX[[1]]`: -1.30906862902939536 1.17240779583392118 ── Failure ('test-v5-prediction-baseline.R:113:3'): legacy prediction remains batch dependent ── Expected `observed_a` to be identical to `expected$batch_a`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.901039161712105963 | -0.901039161712105963 [1] [2] 0.363159018359112962 - 0.363159018359112407 [2] [3] 0.268762591518390659 - 0.268762591518391103 [3] [4] 0.823248914948660260 - 0.823248914948660038 [4] [5] -0.759860079634851027 - -0.759860079634851249 [5] [6] -1.024040236266799297 | -1.024040236266799297 [6] [7] -1.051871031212670893 - -1.051871031212670671 [7] [8] 0.186128422263028032 - 0.186128422263028143 [8] [9] 0.465518019654671433 - 0.465518019654671156 [9] [10] 0.006543747384958430 - 0.006543747384958404 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.7135501391206332533 - 0.7135501391206330313 [1] [2] -1.2402226437387313673 - -1.2402226437387311453 [2] [3] 0.0582946026178390378 - 0.0582946026178390309 [3] [4] -1.3138303242813988980 | -1.3138303242813988980 [4] [5] 0.4169093302416950753 - 0.4169093302416952418 [5] [6] 0.8789365071889502223 | 0.8789365071889502223 [6] [7] 1.5732088936496089193 - 1.5732088936496086973 [7] [8] 0.0828483747313282087 - 0.0828483747313283891 [8] [9] -1.2154084460756604535 | -1.2154084460756604535 [9] [10] 0.0036516133633806326 - 0.0036516133633806291 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:114:3'): legacy prediction remains batch dependent ── Expected `observed_b` to be identical to `expected$batch_b`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.083498732865707942 | -0.083498732865707942 [1] [2] 0.716464026084385419 | 0.716464026084385419 [2] [3] 0.738307188802398540 - 0.738307188802398318 [3] [4] 1.241686979021916937 | 1.241686979021916937 [4] [5] 1.155774660778903229 | 1.155774660778903229 [5] [6] 0.543845460836490768 - 0.543845460836490990 [6] [7] 0.730996087617242440 - 0.730996087617242551 [7] [8] 0.938935531976692883 - 0.938935531976693216 [8] [9] 1.202801149627625410 | 1.202801149627625410 [9] [10] 0.752562704008995165 - 0.752562704008995387 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.023667518245943958 - 0.023667518245943948 [1] [2] 0.245630816471611252 - 0.245630816471611391 [2] [3] -0.027081877813630452 - -0.027081877813630306 [3] [4] 0.705532649728989103 - 0.705532649728989325 [4] [5] 0.073753920820737770 - 0.073753920820738006 [5] [6] 0.722725935264841524 - 0.722725935264841746 [6] [7] 0.136543599320059356 - 0.136543599320059494 [7] [8] 0.563214089054699940 - 0.563214089054700162 [8] [9] 0.571064330127937891 | 0.571064330127937891 [9] [10] 0.599007004240829755 - 0.599007004240829977 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:132:3'): legacy prediction accepts reordered columns and changes results ── Expected `original_result` to be identical to `expected$order_original`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.377851207310069992 - 0.377851207310070158 [1] [2] -1.661923846338249522 - -1.661923846338250188 [2] [3] -0.435415163085950740 - -0.435415163085950907 [3] [4] 1.336839952056728453 - 1.336839952056729119 [4] [5] -0.260404856721396016 - -0.260404856721396238 [5] [6] 0.224063012501865361 - 0.224063012501865610 [6] [7] 0.686007394996469455 - 0.686007394996469566 [7] [8] -0.821575951066536025 - -0.821575951066536136 [8] [9] -0.647018777696336311 - -0.647018777696336422 [9] [10] 0.042101486598538317 - 0.042101486598538518 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -0.352512519580513939 - -0.352512519580514050 [1] [2] 2.787958038405929262 - 2.787958038405929706 [2] [3] 1.331639200146652380 - 1.331639200146652602 [3] [4] -0.955847147775744199 - -0.955847147775744643 [4] [5] 0.490277961321383626 - 0.490277961321384181 [5] [6] 0.420438366175257983 - 0.420438366175257705 [6] [7] -1.202798926228347165 - -1.202798926228347387 [7] [8] 0.988815186193189199 - 0.988815186193189088 [8] [9] 1.179192070653735991 - 1.179192070653736213 [9] [10] -0.735179382065165976 - -0.735179382065166087 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:133:3'): legacy prediction accepts reordered columns and changes results ── Expected `reordered_result` to be identical to `expected$order_reordered`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.232012710474203576 - -0.232012710474203826 [1] [2] -0.007103787754712617 - -0.007103787754712321 [2] [3] -0.245962848808633561 - -0.245962848808633450 [3] [4] -0.101587252040220191 - -0.101587252040220288 [4] [5] 0.243208298252603539 - 0.243208298252603428 [5] [6] -0.933953470350015080 - -0.933953470350015302 [6] [7] 0.894022860229077398 - 0.894022860229077287 [7] [8] -0.399311348539899635 - -0.399311348539899746 [8] [9] 0.023147546093287740 - 0.023147546093287841 [9] [10] 0.091454283206375483 - 0.091454283206375289 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.34411555550255279 - 0.34411555550255329 [1] [2] 0.58758133676527480 - 0.58758133676527413 [2] [3] 0.97007697330008946 - 0.97007697330008924 [3] [4] 0.62829909888181523 - 0.62829909888181545 [4] [5] -0.39399466551305629 - -0.39399466551305595 [5] [6] 1.19550755040646450 - 1.19550755040646473 [6] [7] -1.33932977719953805 | -1.33932977719953805 [7] [8] 1.66990843240999265 - 1.66990843240999287 [8] [9] 0.95366448243845658 - 0.95366448243845636 [9] [10] 0.07676579330297389 - 0.07676579330297444 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:151:3'): legacy multiblock prediction loses block names ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] -0.504460305376386198 - -0.504460305376386753 [1] [2] 0.348554591293173122 - 0.348554591293173011 [2] [3] 0.894840171620574720 - 0.894840171620574609 [3] [4] 0.382532856211924399 - 0.382532856211924455 [4] [5] -0.826959684546364926 - -0.826959684546365370 [5] [6] -0.494210418307085064 - -0.494210418307085397 [6] [7] -1.005368884887175129 | -1.005368884887175129 [7] [8] -0.981402790610048870 - -0.981402790610049425 [8] [9] -0.347839293250236048 - -0.347839293250236214 [9] [10] 1.582388204747432026 - 1.582388204747431582 [10] ... ... ... and 18 more ... actual$X[[2]] | expected$X[[2]] [1] -0.550103168888718685 - -0.550103168888718908 [1] [2] -0.314326015389589153 - -0.314326015389588875 [2] [3] 0.709372955010983963 - 0.709372955010983741 [3] [4] 1.300390306839486643 - 1.300390306839486865 [4] [5] -0.570350875740348817 - -0.570350875740348595 [5] [6] 1.183214844282103106 | 1.183214844282103106 [6] [7] -0.922890651821683061 - -0.922890651821682950 [7] [8] 0.990092429059156398 - 0.990092429059156176 [8] [9] -1.144738029161849191 - -1.144738029161849635 [9] [10] 1.482056561371452030 - 1.482056561371452252 [10] ... ... ... and 11 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -0.022934349077427679 - -0.022934349077427196 [1] [2] -1.050163979928612878 - -1.050163979928612656 [2] [3] -0.123987776839698902 - -0.123987776839699415 [3] [4] 0.197727108153924802 - 0.197727108153924414 [4] [5] 1.230425591137038088 - 1.230425591137038310 [5] [6] 0.220937362474467686 - 0.220937362474467713 [6] [7] 1.106195393721097320 - 1.106195393721097542 [7] [8] -1.073363363736146603 - -1.073363363736147491 [8] [9] -0.258342770455604998 - -0.258342770455605497 [9] [10] 1.749522687451318781 - 1.749522687451318559 [10] ... ... ... and 4 more ... actual$sbX[[2]] | expected$sbX[[2]] [1] 1.656377943653825513 - 1.656377943653824847 [1] [2] -0.924705161360953598 - -0.924705161360953154 [2] [3] 0.882021548017765222 - 0.882021548017764223 [3] [4] -1.014485669035668725 | -1.014485669035668725 [4] [5] -0.102506829844887654 - -0.102506829844887626 [5] [6] -0.578227015634502073 - -0.578227015634502406 [6] [7] 1.114857631877766320 - 1.114857631877766986 [7] [8] 0.266177487655613887 - 0.266177487655613998 [8] [9] -1.005473149034882052 - -1.005473149034882274 [9] [10] 1.523786271699871131 - 1.523786271699871353 [10] ... ... ... and 4 more ... ── Failure ('test-v5-prediction-baseline.R:169:3'): legacy prediction replaces transformed missing values with zero ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.731309470561102182 - 0.731309470561101960 [1] [2] -0.561031006205601313 - -0.561031006205601201 [2] [3] 0.940514623049489074 - 0.940514623049489185 [3] [4] -0.530864693040834279 - -0.530864693040834057 [4] [5] 0.195890450431500579 - 0.195890450431500662 [5] [6] -0.201288468671398407 - -0.201288468671397852 [6] [7] 0.970316774000796300 - 0.970316774000795967 [7] [8] -1.146424868698448840 - -1.146424868698448396 [8] [9] -0.165647173826357630 - -0.165647173826357852 [9] [10] 1.519231174140384999 - 1.519231174140384777 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] 0.384518446517846668 - 0.384518446517846946 [1] [2] -0.900865240818702451 - -0.900865240818702895 [2] [3] -0.152726229247289458 - -0.152726229247289097 [3] [4] -0.301406425890131557 - -0.301406425890131502 [4] [5] -1.793985052892982379 - -1.793985052892983045 [5] [6] 1.127273003797870876 - 1.127273003797871098 [6] [7] -2.518383764690358184 - -2.518383764690359072 [7] [8] 0.897357550023914596 - 0.897357550023914152 [8] [9] 1.368090693065209695 | 1.368090693065209695 [9] [10] -0.759038127662827633 | -0.759038127662827633 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-baseline.R:189:3'): serialized legacy fit predicts identically ── Expected `observed` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.452876183536078225 - 0.452876183536077837 [1] [2] -0.079225667276012976 - -0.079225667276013267 [2] [3] -0.789884115690939637 - -0.789884115690939526 [3] [4] 0.442155505782371505 - 0.442155505782371006 [4] [5] -0.115007809220551552 - -0.115007809220551316 [5] [6] 0.661078552168546940 - 0.661078552168547051 [6] [7] -0.502318791389847807 - -0.502318791389847030 [7] [8] -0.190689619388338644 - -0.190689619388338866 [8] [9] -0.458052745239417247 - -0.458052745239416692 [9] [10] 0.481785007943845656 | 0.481785007943845656 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -1.18325976537039779 - -1.18325976537039734 [1] [2] 0.28239815369849397 | 0.28239815369849397 [2] [3] 2.11512769491940000 | 2.11512769491940000 [3] [4] -1.09529897858729663 | -1.09529897858729663 [4] [5] 0.28046078205544794 - 0.28046078205544778 [5] [6] -1.87853039058592364 - -1.87853039058592319 [6] [7] 1.21743150441035719 - 1.21743150441035697 [7] [8] 0.56608881968930924 - 0.56608881968930935 [8] [9] 1.16058533493207072 - 1.16058533493207028 [9] [10] -1.31920442448685149 | -1.31920442448685149 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-fitted.R:16:3'): default prediction remains the legacy M3-B baseline ── Expected `predict(fit, newX = Xnew)` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.452876183536078225 - 0.452876183536077837 [1] [2] -0.079225667276012976 - -0.079225667276013267 [2] [3] -0.789884115690939637 - -0.789884115690939526 [3] [4] 0.442155505782371505 - 0.442155505782371006 [4] [5] -0.115007809220551552 - -0.115007809220551316 [5] [6] 0.661078552168546940 - 0.661078552168547051 [6] [7] -0.502318791389847807 - -0.502318791389847030 [7] [8] -0.190689619388338644 - -0.190689619388338866 [8] [9] -0.458052745239417247 - -0.458052745239416692 [9] [10] 0.481785007943845656 | 0.481785007943845656 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -1.18325976537039779 - -1.18325976537039734 [1] [2] 0.28239815369849397 | 0.28239815369849397 [2] [3] 2.11512769491940000 | 2.11512769491940000 [3] [4] -1.09529897858729663 | -1.09529897858729663 [4] [5] 0.28046078205544794 - 0.28046078205544778 [5] [6] -1.87853039058592364 - -1.87853039058592319 [6] [7] 1.21743150441035719 - 1.21743150441035697 [7] [8] 0.56608881968930924 - 0.56608881968930935 [8] [9] 1.16058533493207072 - 1.16058533493207028 [9] [10] -1.31920442448685149 | -1.31920442448685149 [10] ... ... ... and 10 more ... ── Failure ('test-v5-prediction-fitted.R:17:3'): default prediction remains the legacy M3-B baseline ── Expected `predict(fit, newX = Xnew, preprocessing = "legacy")` to be identical to `expected`. Differences: actual$X[[1]] | expected$X[[1]] [1] 0.452876183536078225 - 0.452876183536077837 [1] [2] -0.079225667276012976 - -0.079225667276013267 [2] [3] -0.789884115690939637 - -0.789884115690939526 [3] [4] 0.442155505782371505 - 0.442155505782371006 [4] [5] -0.115007809220551552 - -0.115007809220551316 [5] [6] 0.661078552168546940 - 0.661078552168547051 [6] [7] -0.502318791389847807 - -0.502318791389847030 [7] [8] -0.190689619388338644 - -0.190689619388338866 [8] [9] -0.458052745239417247 - -0.458052745239416692 [9] [10] 0.481785007943845656 | 0.481785007943845656 [10] ... ... ... and 50 more ... actual$sbX[[1]] | expected$sbX[[1]] [1] -1.18325976537039779 - -1.18325976537039734 [1] [2] 0.28239815369849397 | 0.28239815369849397 [2] [3] 2.11512769491940000 | 2.11512769491940000 [3] [4] -1.09529897858729663 | -1.09529897858729663 [4] [5] 0.28046078205544794 - 0.28046078205544778 [5] [6] -1.87853039058592364 - -1.87853039058592319 [6] [7] 1.21743150441035719 - 1.21743150441035697 [7] [8] 0.56608881968930924 - 0.56608881968930935 [8] [9] 1.16058533493207072 - 1.16058533493207028 [9] [10] -1.31920442448685149 | -1.31920442448685149 [10] ... ... ... and 10 more ... [ FAIL 13 | WARN 0 | SKIP 3 | PASS 989 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [11s/12s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/Users/ripley/R/packages/tests-devel/msma.Rcheck/00check.log’ for details. 40.75 real 30.87 user 8.21 sys