* using log directory ‘/Users/ripley/R/packages/tests-devel/metR.Rcheck’
* using R Under development (unstable) (2025-12-24 r89227)
* using platform: aarch64-apple-darwin25.2.0
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.6.3.2)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.2
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘metR/DESCRIPTION’ ... OK
* this is package ‘metR’ version ‘0.18.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘metR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [15s/15s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [21s/21s]
 [21s/21s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(metR)
  > # library(vdiffr)
  > 
  > on_cran <- !isTRUE(as.logical(Sys.getenv("NOT_CRAN", "false")))
  > if (on_cran) data.table::setDTthreads(2)
  > 
  > test_check("metR")
  Saving _problems/test-trajectory-4.R
  [ FAIL 1 | WARN 0 | SKIP 20 | PASS 191 ]
  
  ══ Skipped tests (20) ══════════════════════════════════════════════════════════
  • On CRAN (20): 'test-GetTopography.R:3:5', 'test-ReadNetCDF.R:81:5',
    'test-vis-arrow.R:9:1', 'test-vis-arrow.R:31:1', 'test-vis-contour2.R:10:1',
    'test-vis-contour2.R:24:1', 'test-vis-contour2.R:34:1',
    'test-vis-contour2.R:52:1', 'test-vis-contour2.R:71:1',
    'test-vis-contour_fill.R:11:1', 'test-vis-contour_fill.R:25:1',
    'test-vis-contour_fill.R:36:1', 'test-vis-discretised-scale.R:12:1',
    'test-vis-geom-relief.R:10:1', 'test-vis-guide_colorstrip.R:13:1',
    'test-vis-streamline.R:18:1', 'test-vis-streamline.R:27:1',
    'test-vis-text-contour.R:11:1', 'test-vis-text-contour.R:67:1',
    'test-vis-text-contour.R:78:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-trajectory.R:4:1'): (code run outside of `test_that()`) ────────
  Error in ``[.data.table`(geopotential, , `:=`(c("u", "v"), GeostrophicWind(gh, lon, lat)), by = date)`: Internal error in dogroups: Trying to add new column by reference but tl is full; setalloccol should have run first at R level before getting to this point. Please report to the data.table issues tracker.
  Backtrace:
      ▆
   1. ├─...[] at test-trajectory.R:4:1
   2. └─data.table:::`[.data.table`(...) at test-trajectory.R:4:1
  
  [ FAIL 1 | WARN 0 | SKIP 20 | PASS 191 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [14s/14s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘Visualization-tools.Rmd’ using knitr

Quitting from Visualization-tools.Rmd:250-261 [unnamed-chunk-17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! Internal error in dogroups: Trying to add new column by reference but tl is full; setalloccol should have run first at R level before getting to this point. Please report to the data.table issues tracker.
---
Backtrace:
    ▆
 1. ├─ggplot2::ggplot(...)
 2. ├─geopotential[, `:=`(gh.base, gh[lon == 120 & lat == -50]), by = date]
 3. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Visualization-tools.Rmd' failed with diagnostics:
Internal error in dogroups: Trying to add new column by reference but tl is full; setalloccol should have run first at R level before getting to this point. Please report to the data.table issues tracker.
--- failed re-building ‘Visualization-tools.Rmd’

--- re-building ‘Working-with-data.Rmd’ using knitr

Quitting from Working-with-data.Rmd:117-124 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! Internal error in dogroups: Trying to add new column by reference but tl is full; setalloccol should have run first at R level before getting to this point. Please report to the data.table issues tracker.
---
Backtrace:
    ▆
 1. ├─...[]
 2. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Working-with-data.Rmd' failed with diagnostics:
Internal error in dogroups: Trying to add new column by reference but tl is full; setalloccol should have run first at R level before getting to this point. Please report to the data.table issues tracker.
--- failed re-building ‘Working-with-data.Rmd’

SUMMARY: processing the following files failed:
  ‘Visualization-tools.Rmd’ ‘Working-with-data.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs
See
  ‘/Users/ripley/R/packages/tests-devel/metR.Rcheck/00check.log’
for details.

       88.15 real        79.42 user         7.82 sys