* using log directory ‘/Users/ripley/R/packages/tests-devel/kDGLM.Rcheck’ * using R Under development (unstable) (2026-08-15 r90409) * using platform: aarch64-apple-darwin25.6.0 * R was compiled by Apple clang version 21.0.0 (clang-2100.1.1.101) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.6.1 * using session charset: UTF-8 * current time: 2026-08-15 08:11:43 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘kDGLM/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘kDGLM’ version ‘1.2.14’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘kDGLM’ can be installed ... OK * checking installed package size ... INFO installed size is 10.6Mb sub-directories of 1Mb or more: doc 9.7Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [19s/95s] ERROR Error(s) in re-building vignettes: --- re-building ‘example1.Rmd’ using rmarkdown Quitting from example1.Rmd:331-367 [unnamed-chunk-17] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `UseMethod()`: ! no applicable method for 'st_as_sf' applied to an object of class "NULL" --- Backtrace: ▆ 1. ├─dplyr::mutate(...) 2. └─sf::st_as_sf(gadm(country = "BRA", level = 1)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'example1.Rmd' failed with diagnostics: no applicable method for 'st_as_sf' applied to an object of class "NULL" --- failed re-building ‘example1.Rmd’ --- re-building ‘fitting.Rmd’ using rmarkdown --- finished re-building ‘fitting.Rmd’ --- re-building ‘intro.Rmd’ using rmarkdown --- finished re-building ‘intro.Rmd’ --- re-building ‘outcomes.Rmd’ using rmarkdown --- finished re-building ‘outcomes.Rmd’ --- re-building ‘structures.Rmd’ using rmarkdown --- finished re-building ‘structures.Rmd’ SUMMARY: processing the following file failed: ‘example1.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/Users/ripley/R/packages/tests-devel/kDGLM.Rcheck/00check.log’ for details. 129.07 real 44.46 user 8.02 sys