* using log directory ‘/Users/ripley/R/packages/tests-devel/iBART.Rcheck’ * using R Under development (unstable) (2026-01-14 r89303) * using platform: aarch64-apple-darwin25.2.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.3.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.2 * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘iBART/DESCRIPTION’ ... OK * this is package ‘iBART’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘iBART’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... NONE * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [20s/28s] ERROR Error(s) in re-building vignettes: --- re-building ‘real_data.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘real_data.Rmd’ --- re-building ‘simulation.Rmd’ using rmarkdown Quitting from simulation.Rmd:47-61 [iBART short] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.jnew()`: ! java.lang.NoClassDefFoundError: jdk/incubator/vector/Vector --- Backtrace: ▆ 1. └─iBART::iBART(...) 2. └─iBART:::BART_iter(...) 3. └─bartMachine::bartMachine(...) 4. └─bartMachine::build_bart_machine(...) 5. └─rJava::.jnew("bartMachine.bartMachineRegressionMultThread") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'simulation.Rmd' failed with diagnostics: java.lang.NoClassDefFoundError: jdk/incubator/vector/Vector --- failed re-building ‘simulation.Rmd’ SUMMARY: processing the following file failed: ‘simulation.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/Users/ripley/R/packages/tests-devel/iBART.Rcheck/00check.log’ for details. 65.12 real 44.31 user 9.46 sys