* using log directory ‘/Users/ripley/R/packages/tests-devel/hddtools.Rcheck’ * using R Under development (unstable) (2021-10-27 r81107) * using platform: aarch64-apple-darwin21.1.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘hddtools/DESCRIPTION’ ... OK * this is package ‘hddtools’ version ‘0.9.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘hddtools’ can be installed ... [6s/16s] OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [2s/12s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [3s/13s] WARNING Error(s) in re-building vignettes: --- re-building ‘hddtools_vignette.Rmd’ using rmarkdown Loading required package: rgdal Loading required package: sp Please note that rgdal will be retired by the end of 2023, plan transition to sf/stars/terra functions using GDAL and PROJ at your earliest convenience. rgdal: version: 1.5-27, (SVN revision 1148) Geospatial Data Abstraction Library extensions to R successfully loaded Loaded GDAL runtime: GDAL 3.3.2, released 2021/09/01 Path to GDAL shared files: /Users/ripley/R/Library/rgdal/gdal GDAL binary built with GEOS: FALSE Loaded PROJ runtime: Rel. 7.2.1, January 1st, 2021, [PJ_VERSION: 721] Path to PROJ shared files: /Users/ripley/R/Library/rgdal/proj PROJ CDN enabled: FALSE Linking to sp version:1.4-5 To mute warnings of possible GDAL/OSR exportToProj4() degradation, use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal. Overwritten PROJ_LIB was /Users/ripley/R/Library/rgdal/proj Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Quitting from lines 65-70 (hddtools_vignette.Rmd) Error: processing vignette 'hddtools_vignette.Rmd' failed with diagnostics: arguments imply differing number of rows: 0, 5 --- failed re-building ‘hddtools_vignette.Rmd’ SUMMARY: processing the following file failed: ‘hddtools_vignette.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 WARNING See ‘/Users/ripley/R/packages/tests-devel/hddtools.Rcheck/00check.log’ for details. 122.02 real 54.55 user 4.20 sys