* using log directory ‘/Users/ripley/R/packages/tests-devel/geofi.Rcheck’ * using R Under development (unstable) (2025-04-11 r88138) * using platform: aarch64-apple-darwin24.4.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.0.13.3) GNU Fortran (GCC) 14.2.0 * running under: macOS Sequoia 15.4 * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘geofi/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘geofi’ version ‘1.0.18’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘geofi’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [23s/35s] ERROR Error(s) in re-building vignettes: --- re-building ‘geofi_datasets.Rmd’ using rmarkdown --- finished re-building ‘geofi_datasets.Rmd’ --- re-building ‘geofi_joining_attribute_data.Rmd’ using rmarkdown --- finished re-building ‘geofi_joining_attribute_data.Rmd’ --- re-building ‘geofi_making_maps.Rmd’ using rmarkdown --- finished re-building ‘geofi_making_maps.Rmd’ --- re-building ‘geofi_spatial_analysis.Rmd’ using rmarkdown Quitting from geofi_spatial_analysis.Rmd:151-157 [bb_point] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `geos_op2_geom()`: ! st_crs(x) == st_crs(y) is not TRUE --- Backtrace: ▆ 1. ├─ggplot2::ggplot(st_intersection(bounding_box_point, muni)) 2. ├─sf::st_intersection(bounding_box_point, muni) 3. └─sf:::st_intersection.sfc(bounding_box_point, muni) 4. └─sf:::geos_op2_geom("intersection", x, y, ...) 5. └─base::stopifnot(st_crs(x) == st_crs(y)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'geofi_spatial_analysis.Rmd' failed with diagnostics: st_crs(x) == st_crs(y) is not TRUE --- failed re-building ‘geofi_spatial_analysis.Rmd’ SUMMARY: processing the following file failed: ‘geofi_spatial_analysis.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/Users/ripley/R/packages/tests-devel/geofi.Rcheck/00check.log’ for details. 68.58 real 43.56 user 7.61 sys