* using log directory ‘/Users/ripley/R/packages/tests-devel/gamboostLSS.Rcheck’ * using R Under development (unstable) (2025-12-22 r89219) * using platform: aarch64-apple-darwin25.2.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.3.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.2 * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘gamboostLSS/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘gamboostLSS’ version ‘2.1-0’ * checking package namespace information ... OK * checking package dependencies ... INFO Package suggested but not available for checking: ‘R2BayesX’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gamboostLSS’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘bugfixes.R’ Running ‘regtest-families.R’ [25s/18s] Running ‘regtest-gamboostLSS.R’ Running ‘regtest-glmboostLSS.R’ Running ‘regtest-mstop.R’ Running ‘regtest-noncyclic_fitting.R’ Running ‘regtest-stabilization.R’ Running ‘regtest-stabsel.R’ [40s/32s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: --- re-building ‘gamboostLSS_Tutorial.Rnw’ using Sweave Loading required package: R2BayesX Installing package into '/Users/ripley/R/packages/tests-devel/gamboostLSS.Rcheck' (as 'lib' is unspecified) also installing the dependency 'BayesXsrc' trying URL 'http://cran.at.r-project.org/src/contrib/BayesXsrc_3.0-6.tar.gz' trying URL 'http://cran.at.r-project.org/src/contrib/R2BayesX_1.1-6.tar.gz' Warning: SystemRequirements specified C++14: support will be removed soon * installing *source* package ‘BayesXsrc’ ... ** this is package ‘BayesXsrc’ version ‘3.0-6’ ** package ‘BayesXsrc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs `"/Users/ripley/R/R-devel/bin/R" CMD config CXX14` -std=gnu++17 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -isystem /opt/R/arm64/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fPIC `"/Users/ripley/R/R-devel/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/andrea/baseline.cpp -o bayesxsrc/andrea/baseline.o 'config' variable 'CXX14' is defunct 'config' variable 'CXX14FLAGS' is defunct /bin/sh: -std=gnu++17: command not found make[1]: *** [bayesxsrc/andrea/baseline.o] Error 127 ERROR: compilation failed for package ‘BayesXsrc’ * removing ‘/Users/ripley/R/packages/tests-devel/gamboostLSS.Rcheck/BayesXsrc’ ERROR: dependency ‘BayesXsrc’ is not available for package ‘R2BayesX’ Perhaps try a variation of: install.packages('BayesXsrc') * removing ‘/Users/ripley/R/packages/tests-devel/gamboostLSS.Rcheck/R2BayesX’ The downloaded source packages are in '/private/var/folders/pk/n4bndnt1287ctrd_ftthnnnr0000gp/T/RtmpDY16nO/working_dir/RtmpX33YSm/downloaded_packages' Loading required package: gamboostLSS Loading required package: mboost Loading required package: parallel Loading required package: stabs Attaching package: 'gamboostLSS' The following object is masked from 'package:stats': model.weights Error: processing vignette 'gamboostLSS_Tutorial.Rnw' failed with diagnostics: chunk 11 (label = india_stunting1) Error in library("R2BayesX") : there is no package called 'R2BayesX' --- failed re-building 'gamboostLSS_Tutorial.Rnw' SUMMARY: processing the following file failed: 'gamboostLSS_Tutorial.Rnw' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/Users/ripley/R/packages/tests-devel/gamboostLSS.Rcheck/00check.log’ for details. 70.01 real 59.70 user 12.53 sys