* using log directory ‘/Users/ripley/R/packages/tests-devel/enviPathR.Rcheck’
* using R Under development (unstable) (2026-09-18 r90566)
* using platform: aarch64-apple-darwin27.0.0
* R was compiled by
    Apple clang version 21.0.0 (clang-2100.3.34.2)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Golden Gate 27.0.1
* using session charset: UTF-8
* current time: 2026-10-14 15:53:23 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘enviPathR/DESCRIPTION’ ... OK
* this is package ‘enviPathR’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘enviPathR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(enviPathR)
  > 
  > test_check("enviPathR")
  objc[31312]: +[Swift.__SharedStringStorage initialize] may have been in progress in another thread when fork() was called.
  objc[31312]: +[Swift.__SharedStringStorage initialize] may have been in progress in another thread when fork() was called. We cannot safely call it or ignore it in the fork() child process. Crashing instead. Set a breakpoint on objc_initializeAfterForkError to debug.
  Saving _problems/test-get-18.R
  objc[31433]: +[Swift.__SharedStringStorage initialize] may have been in progress in another thread when fork() was called.
  objc[31433]: +[Swift.__SharedStringStorage initialize] may have been in progress in another thread when fork() was called. We cannot safely call it or ignore it in the fork() child process. Crashing instead. Set a breakpoint on objc_initializeAfterForkError to debug.
  Saving _problems/test-link-19.R
  [ FAIL 2 | WARN 2 | SKIP 0 | PASS 20 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-get.R:14:9'): get ──────────────────────────────────────────────
  Error in `reducer$value.cache[[as.character(idx)]] <- values`: wrong args for environment subassignment
  Backtrace:
       ▆
    1. ├─testthat::expect_error(...) at test-get.R:14:9
    2. │ └─testthat:::expect_condition_matching_(...)
    3. │   └─testthat:::quasi_capture(...)
    4. │     ├─testthat (local) .capture(...)
    5. │     │ └─base::withCallingHandlers(...)
    6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    7. └─enviPathR::epGet("reaction", "wrong")
    8.   ├─BiocParallel::bpmapply(...)
    9.   └─BiocParallel::bpmapply(...)
   10.     ├─BiocParallel::bplapply(...)
   11.     └─BiocParallel::bplapply(...)
   12.       └─BiocParallel:::.bpinit(...)
   13.         ├─BiocParallel::bploop(...)
   14.         └─BiocParallel:::bploop.lapply(...)
   15.           └─BiocParallel:::.bploop_impl(...)
   16.             └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
   17.               ├─BiocParallel:::.reducer_add(reducer, njob, value)
   18.               └─BiocParallel:::.reducer_add(reducer, njob, value)
  ── Error ('test-link.R:15:9'): link ────────────────────────────────────────────
  Error in `reducer$value.cache[[as.character(idx)]] <- values`: wrong args for environment subassignment
  Backtrace:
       ▆
    1. ├─testthat::expect_error(...) at test-link.R:15:9
    2. │ └─testthat:::expect_condition_matching_(...)
    3. │   └─testthat:::quasi_capture(...)
    4. │     ├─testthat (local) .capture(...)
    5. │     │ └─base::withCallingHandlers(...)
    6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    7. └─enviPathR::epLink(types[1], types[2], "wrong")
    8.   ├─BiocParallel::bplapply(...)
    9.   └─BiocParallel::bplapply(...)
   10.     └─BiocParallel:::.bpinit(...)
   11.       ├─BiocParallel::bploop(...)
   12.       └─BiocParallel:::bploop.lapply(...)
   13.         └─BiocParallel:::.bploop_impl(...)
   14.           └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
   15.             ├─BiocParallel:::.reducer_add(reducer, njob, value)
   16.             └─BiocParallel:::.reducer_add(reducer, njob, value)
  
  [ FAIL 2 | WARN 2 | SKIP 0 | PASS 20 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [9s/16s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/ripley/R/packages/tests-devel/enviPathR.Rcheck/00check.log’
for details.

       55.79 real        22.40 user         9.66 sys