* using log directory ‘/Users/ripley/R/packages/tests-devel/dsROCrate.Rcheck’
* using R Under development (unstable) (2026-04-25 r89962)
* using platform: aarch64-apple-darwin25.4.0
* R was compiled by
    Apple clang version 21.0.0 (clang-2100.1.1.101)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.4.1
* using session charset: UTF-8
* current time: 2026-04-26 13:18:19 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘dsROCrate/DESCRIPTION’ ... OK
* this is package ‘dsROCrate’ version ‘0.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘dsROCrate’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [8s/14s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘deploy-local-datashield-server-with-opal.Rmd’ using rmarkdown
--- finished re-building ‘deploy-local-datashield-server-with-opal.Rmd’

--- re-building ‘getting-started.Rmd’ using rmarkdown

Quitting from getting-started.Rmd:403-412 [unnamed-chunk-25]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Entity with `@id = './'`` already contains key `'hasPart'`.
Use `overwrite = TRUE` to replace the existing value.
---
Backtrace:
     ▆
  1. ├─dsROCrate::audit(...)
  2. └─dsROCrate:::audit.opal(...)
  3.   ├─dsROCrate:::audit_engine(...)
  4.   └─dsROCrate:::audit_engine.opal(...)
  5.     └─purrr::reduce(...)
  6.       └─purrr:::reduce_impl(.x, .f, ..., .init = .init, .dir = .dir)
  7.         └─dsROCrate (local) fn(out, elt, ...)
  8.           ├─dsROCrate::safe_output(...)
  9.           └─dsROCrate:::safe_output.rocrate(...)
 10.             ├─dsROCrate::safe_output(...)
 11.             └─dsROCrate:::safe_output.opal(...)
 12.               └─rocrateR::add_entity_value(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'getting-started.Rmd' failed with diagnostics:
Entity with `@id = './'`` already contains key `'hasPart'`.
Use `overwrite = TRUE` to replace the existing value.
--- failed re-building ‘getting-started.Rmd’

SUMMARY: processing the following file failed:
  ‘getting-started.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/ripley/R/packages/tests-devel/dsROCrate.Rcheck/00check.log’
for details.

       34.80 real        20.20 user         6.91 sys