* using log directory ‘/Users/ripley/R/packages/tests-devel/ctsmTMB.Rcheck’
* using R Under development (unstable) (2026-07-14 r90254)
* using platform: aarch64-apple-darwin25.5.0
* R was compiled by
    Apple clang version 21.0.0 (clang-2100.1.1.101)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.5.2
* using session charset: UTF-8
* current time: 2026-07-15 05:03:17 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘ctsmTMB/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ctsmTMB’ version ‘1.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ctsmTMB’ can be installed ... [46s/48s] OK
* used C++ compiler: ‘Apple clang version 21.0.0 (clang-2100.1.1.101)’
* used SDK: ‘MacOSX26.5.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [17s/19s]
 [18s/19s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(ctsmTMB)
  > 
  > test_check("ctsmTMB")
  Timing stopped at: 0.006 0.002 0.009
  Saving _problems/test-estimate-62.R
  Timing stopped at: 0.006 0 0.006
  Saving _problems/test-estimate-69.R
  Timing stopped at: 0.007 0 0.009
  Saving _problems/test-estimate-76.R
  Timing stopped at: 0.005 0 0.005
  Saving _problems/test-estimate-83.R
  Timing stopped at: 0.004 0 0.005
  Saving _problems/test-likelihood-62.R
  Timing stopped at: 0.005 0 0.005
  Saving _problems/test-likelihood-69.R
  Timing stopped at: 0.005 0 0.005
  Saving _problems/test-likelihood-76.R
  Timing stopped at: 0.006 0 0.005
  Saving _problems/test-likelihood-83.R
  Timing stopped at: 0.004 0 0.005
  Saving _problems/test-smooth-62.R
  Timing stopped at: 0.005 0 0.005
  Saving _problems/test-smooth-69.R
  Timing stopped at: 0.004 0 0.005
  Saving _problems/test-smooth-76.R
  Timing stopped at: 0.006 0 0.005
  Saving _problems/test-smooth-83.R
  [ FAIL 12 | WARN 0 | SKIP 2 | PASS 102 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • Author test - skipping due to minor numerical inconsistencies across
    operating systems and versions (2): 'test_estimate_against_reference.R:21:3',
    'test_filter_predict_simulate_against_reference.R:16:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-estimate.R:62:5'): Checking for 'estimate' errors in 1/1 model ──
  Expected `object` not to throw any errors.
  Actually got a <Rcpp::exception> with message:
    '*this' is not a valid 'advector' (constructed using illegal operation?)
  Backtrace:
      ▆
   1. └─ctsmTMB (local) my_expect_no_error(...) at test-estimate.R:62:5
   2.   ├─base::suppressWarnings(...) at test-estimate.R:53:3
   3.   │ └─base::withCallingHandlers(...)
   4.   └─testthat::expect_no_error(...)
  ── Failure ('test-estimate.R:69:5'): Checking for 'estimate' errors in 2/2 model ──
  Expected `object` not to throw any errors.
  Actually got a <Rcpp::exception> with message:
    '*this' is not a valid 'advector' (constructed using illegal operation?)
  Backtrace:
      ▆
   1. └─ctsmTMB (local) my_expect_no_error(...) at test-estimate.R:69:5
   2.   ├─base::suppressWarnings(...) at test-estimate.R:53:3
   3.   │ └─base::withCallingHandlers(...)
   4.   └─testthat::expect_no_error(...)
  ── Failure ('test-estimate.R:76:5'): Checking for 'estimate' errors in 2/3 model ──
  Expected `object` not to throw any errors.
  Actually got a <Rcpp::exception> with message:
    '*this' is not a valid 'advector' (constructed using illegal operation?)
  Backtrace:
      ▆
   1. └─ctsmTMB (local) my_expect_no_error(...) at test-estimate.R:76:5
   2.   ├─base::suppressWarnings(...) at test-estimate.R:53:3
   3.   │ └─base::withCallingHandlers(...)
   4.   └─testthat::expect_no_error(...)
  ── Failure ('test-estimate.R:83:5'): Checking for 'estimate' errors in 3/2 model ──
  Expected `object` not to throw any errors.
  Actually got a <Rcpp::exception> with message:
    '*this' is not a valid 'advector' (constructed using illegal operation?)
  Backtrace:
      ▆
   1. └─ctsmTMB (local) my_expect_no_error(...) at test-estimate.R:83:5
   2.   ├─base::suppressWarnings(...) at test-estimate.R:53:3
   3.   │ └─base::withCallingHandlers(...)
   4.   └─testthat::expect_no_error(...)
  ── Failure ('test-likelihood.R:62:5'): Checking for 'estimate' errors in 1/1 model ──
  Expected `object` not to throw any errors.
  Actually got a <Rcpp::exception> with message:
    '*this' is not a valid 'advector' (constructed using illegal operation?)
  Backtrace:
      ▆
   1. └─ctsmTMB (local) my_expect_no_error(...) at test-likelihood.R:62:5
   2.   ├─base::suppressWarnings(...) at test-likelihood.R:53:3
   3.   │ └─base::withCallingHandlers(...)
   4.   └─testthat::expect_no_error(...)
  ── Failure ('test-likelihood.R:69:5'): Checking for 'estimate' errors in 2/2 model ──
  Expected `object` not to throw any errors.
  Actually got a <Rcpp::exception> with message:
    '*this' is not a valid 'advector' (constructed using illegal operation?)
  Backtrace:
      ▆
   1. └─ctsmTMB (local) my_expect_no_error(...) at test-likelihood.R:69:5
   2.   ├─base::suppressWarnings(...) at test-likelihood.R:53:3
   3.   │ └─base::withCallingHandlers(...)
   4.   └─testthat::expect_no_error(...)
  ── Failure ('test-likelihood.R:76:5'): Checking for 'estimate' errors in 2/3 model ──
  Expected `object` not to throw any errors.
  Actually got a <Rcpp::exception> with message:
    '*this' is not a valid 'advector' (constructed using illegal operation?)
  Backtrace:
      ▆
   1. └─ctsmTMB (local) my_expect_no_error(...) at test-likelihood.R:76:5
   2.   ├─base::suppressWarnings(...) at test-likelihood.R:53:3
   3.   │ └─base::withCallingHandlers(...)
   4.   └─testthat::expect_no_error(...)
  ── Failure ('test-likelihood.R:83:5'): Checking for 'estimate' errors in 3/2 model ──
  Expected `object` not to throw any errors.
  Actually got a <Rcpp::exception> with message:
    '*this' is not a valid 'advector' (constructed using illegal operation?)
  Backtrace:
      ▆
   1. └─ctsmTMB (local) my_expect_no_error(...) at test-likelihood.R:83:5
   2.   ├─base::suppressWarnings(...) at test-likelihood.R:53:3
   3.   │ └─base::withCallingHandlers(...)
   4.   └─testthat::expect_no_error(...)
  ── Failure ('test-smooth.R:62:5'): Checking for 'estimate' errors in 1/1 model ──
  Expected `object` not to throw any errors.
  Actually got a <Rcpp::exception> with message:
    '*this' is not a valid 'advector' (constructed using illegal operation?)
  Backtrace:
      ▆
   1. └─ctsmTMB (local) my_expect_no_error(...) at test-smooth.R:62:5
   2.   ├─base::suppressWarnings(...) at test-smooth.R:53:3
   3.   │ └─base::withCallingHandlers(...)
   4.   └─testthat::expect_no_error(...)
  ── Failure ('test-smooth.R:69:5'): Checking for 'estimate' errors in 2/2 model ──
  Expected `object` not to throw any errors.
  Actually got a <Rcpp::exception> with message:
    '*this' is not a valid 'advector' (constructed using illegal operation?)
  Backtrace:
      ▆
   1. └─ctsmTMB (local) my_expect_no_error(...) at test-smooth.R:69:5
   2.   ├─base::suppressWarnings(...) at test-smooth.R:53:3
   3.   │ └─base::withCallingHandlers(...)
   4.   └─testthat::expect_no_error(...)
  ── Failure ('test-smooth.R:76:5'): Checking for 'estimate' errors in 2/3 model ──
  Expected `object` not to throw any errors.
  Actually got a <Rcpp::exception> with message:
    '*this' is not a valid 'advector' (constructed using illegal operation?)
  Backtrace:
      ▆
   1. └─ctsmTMB (local) my_expect_no_error(...) at test-smooth.R:76:5
   2.   ├─base::suppressWarnings(...) at test-smooth.R:53:3
   3.   │ └─base::withCallingHandlers(...)
   4.   └─testthat::expect_no_error(...)
  ── Failure ('test-smooth.R:83:5'): Checking for 'estimate' errors in 3/2 model ──
  Expected `object` not to throw any errors.
  Actually got a <Rcpp::exception> with message:
    '*this' is not a valid 'advector' (constructed using illegal operation?)
  Backtrace:
      ▆
   1. └─ctsmTMB (local) my_expect_no_error(...) at test-smooth.R:83:5
   2.   ├─base::suppressWarnings(...) at test-smooth.R:53:3
   3.   │ └─base::withCallingHandlers(...)
   4.   └─testthat::expect_no_error(...)
  
  [ FAIL 12 | WARN 0 | SKIP 2 | PASS 102 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [33s/35s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/ripley/R/packages/tests-devel/ctsmTMB.Rcheck/00check.log’
for details.

      140.57 real       116.96 user        17.31 sys