* using log directory ‘/Users/ripley/R/packages/tests-devel/commons.Rcheck’
* using R Under development (unstable) (2026-09-11 r90521)
* using platform: aarch64-apple-darwin25.6.0
* R was compiled by
    Apple clang version 21.0.0 (clang-2100.1.1.101)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.6.2
* using session charset: UTF-8
* current time: 2026-09-11 16:40:43 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘commons/DESCRIPTION’ ... OK
* this is package ‘commons’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘commons’ can be installed ... OK
* used C compiler: ‘Apple clang version 21.0.0 (clang-2100.1.1.101)’
* used SDK: ‘MacOSX26.5.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [112s/54s]
 [112s/55s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(commons)
  > 
  > test_check("commons")
  Starting 2 test processes.
  Saving _problems/test-run-r-29.R
  Saving _problems/test-run-r-46.R
  Saving _problems/test-run-r-47.R
  Saving _problems/test-run-r-64.R
  Saving _problems/test-run-r-111.R
  Saving _problems/test-run-r-125.R
  Saving _problems/test-run-r-126.R
  Saving _problems/test-run-r-163.R
  Saving _problems/test-run-r-195.R
  Saving _problems/test-run-r-198.R
  Saving _problems/test-run-r-208.R
  Saving _problems/test-run-r-219.R
  Saving _problems/test-run-r-221.R
  Saving _problems/test-run-r-232.R
  Saving _problems/test-run-r-245.R
  Saving _problems/test-run-r-281.R
  Saving _problems/test-run-r-291.R
  Saving _problems/test-run-r-294.R
  Saving _problems/test-run-r-304.R
  Saving _problems/test-run-r-308.R
  Saving _problems/test-run-r-319.R
  > test-trajectory-review.R: Loading required package: shiny
  Saving _problems/test-sandbox-251.R
  Saving _problems/test-sandbox-287.R
  > test-tracing.R: [Warning] File: /private/var/folders/pk/n4bndnt1287ctrd_ftthnnnr0000gp/T/RtmpjEwsi4/R.INSTALL1163778b48e2b/otelsdk/src/cpp/sdk/src/metrics/metric_reader.cc:36 MetricReader::Collect invoked while Shutdown in progress!
  [ FAIL 23 | WARN 0 | SKIP 86 | PASS 7189 ]
  
  ══ Skipped tests (86) ══════════════════════════════════════════════════════════
  • COMMONS_TEST_CONNECT_VANITY_URL is not set (1): 'test-trajectories.R:1524:3'
  • On CRAN (60): 'test-citation-browser.R:11:3',
    'test-citation-browser.R:181:3', 'test-citation-browser.R:340:3',
    'test-commons.R:162:1', 'test-commons.R:380:1', 'test-commons.R:602:3',
    'test-commons.R:630:3', 'test-commons.R:678:3', 'test-commons.R:694:3',
    'test-commons.R:763:5', 'test-data-source.R:20:1', 'test-data-source.R:81:1',
    'test-data-source.R:249:1', 'test-data-source.R:259:1',
    'test-data-source.R:275:1', 'test-data-source.R:294:1',
    'test-data-source.R:325:1', 'test-data-source.R:411:1',
    'test-data-source.R:488:1', 'test-data-source.R:499:1',
    'test-catalog-databricks.R:446:1', 'test-catalog-databricks.R:453:1',
    'test-trajectory-review.R:265:1', 'test-catalog-snowflake.R:520:1',
    'test-chat.R:93:1', 'test-chat.R:100:1', 'test-connect.R:11:1',
    'test-connect.R:71:1', 'test-connect.R:192:1', 'test-connect.R:232:1',
    'test-data-dictionary.R:85:1', 'test-data-dictionary.R:113:1',
    'test-data-dictionary.R:311:1', 'test-layer-objects.R:61:1',
    'test-measures.R:20:1', 'test-measures.R:42:1', 'test-measures.R:79:1',
    'test-measures.R:86:1', 'test-measures.R:93:1', 'test-read-measures.R:390:1',
    'test-tools.R:413:1', 'test-tracing.R:1:1', 'test-tracing.R:20:1',
    'test-tracing.R:25:1', 'test-tracing.R:32:3', 'test-tracing.R:76:1',
    'test-tracing.R:105:1', 'test-tracing.R:120:1', 'test-tracing.R:147:1',
    'test-tracing.R:183:1', 'test-tracing.R:231:1', 'test-tracing.R:282:3',
    'test-trajectory-review-log.R:63:1', 'test-trajectories.R:1064:1',
    'test-trajectories.R:1077:1', 'test-trajectories.R:1161:1',
    'test-trajectories.R:1191:3', 'test-trajectories.R:1407:1',
    'test-trajectories.R:1461:1', 'test-trajectories.R:1536:1'
  • On Mac (1): 'test-sandbox.R:69:3'
  • Set options(commons.test.databricks = DBI::Id(...)) to run live warehouse
    tests (7): 'test-live-warehouses.R:406:3', 'test-live-warehouses.R:488:3',
    'test-live-warehouses.R:519:3', 'test-live-warehouses.R:559:3',
    'test-live-warehouses.R:632:3', 'test-live-warehouses.R:660:3',
    'test-live-warehouses.R:743:3'
  • Set options(commons.test.databricks.denied_table = DBI::Id(...)) (1):
    'test-live-warehouses.R:508:3'
  • Set options(commons.test.databricks.parameterized_model = DBI::Id(...)) (1):
    'test-live-warehouses.R:613:3'
  • Set options(commons.test.snowflake = DBI::Id(...)) to run live warehouse
    tests (7): 'test-live-warehouses.R:2:3', 'test-live-warehouses.R:100:3',
    'test-live-warehouses.R:123:3', 'test-live-warehouses.R:159:3',
    'test-live-warehouses.R:199:3', 'test-live-warehouses.R:282:3',
    'test-live-warehouses.R:356:3'
  • Set options(commons.test.snowflake.denied_table = DBI::Id(...)) (1):
    'test-live-warehouses.R:148:3'
  • Set options(commons.test.snowflake.parameterized_model = DBI::Id(...)) (1):
    'test-live-warehouses.R:320:3'
  • Set options(commons.test.snowflake.semantic_view = DBI::Id(...)) to run this
    test (1): 'test-live-warehouses.R:286:3'
  • Set options(commons.test.snowflake.verified_query_view = DBI::Id(...)) (1):
    'test-live-warehouses.R:339:3'
  • data-dict CLI is not installed (2): 'test-definition-export.R:148:5',
    'test-definition-export.R:172:5'
  • identical(Sys.info()[["sysname"]], "Linux") is not TRUE (1):
    'test-sandbox.R:264:3'
  • not a source checkout (1): 'test-assets-synced.R:6:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-run-r.R:29:3'): run_r executes code against stored handles ───
  Expected `res@value` to match regexp "5650".
  Actual text:
  x | Error: ! in callr subprocess.
    | Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
    | ! sandbox_init failed: compilation failed
  ── Failure ('test-run-r.R:42:3'): run_r executes code against stored handles ───
  Expected `res@extra$display$html` to match string "<span class=\"hl com\">#&gt; [1] 5650</span>".
  Actual text:
  x | <div class="commons-run-r-display"><pre class="commons-run-r-code"><code class="language-r"><span class="hl kwd">sum</span><span class="hl def">(r1</span><span class="hl opt">$</span><span class="hl def">revenue)</span>
    | <span class="hl com">#&gt; ! in callr subprocess.</span>
    | <span class="hl com">#&gt; Caused by error in `(function (parent_tmp, work_dir, dll_path, network = &quot;none&quot;, ...`:</span>
    | <span class="hl com">#&gt; ! sandbox_init failed: compilation failed</span></code></pre></div>
  ── Failure ('test-run-r.R:47:3'): run_r executes code against stored handles ───
  Expected `res@extra$display$html` to match string "#&gt; [1] 5650".
  Actual text:
  x | <div class="commons-run-r-display"><pre class="commons-run-r-code"><code class="language-r"><span class="hl kwd">sum</span><span class="hl def">(r1</span><span class="hl opt">$</span><span class="hl def">revenue)</span>
    | <span class="hl com">#&gt; ! in callr subprocess.</span>
    | <span class="hl com">#&gt; Caused by error in `(function (parent_tmp, work_dir, dll_path, network = &quot;none&quot;, ...`:</span>
    | <span class="hl com">#&gt; ! sandbox_init failed: compilation failed</span></code></pre></div>
  ── Failure ('test-run-r.R:64:3'): run_r session state persists across calls, and handles sync lazily ──
  Expected `res@value` to match regexp "48".
  Actual text:
  x | Error: ! in callr subprocess.
    | Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
    | ! sandbox_init failed: compilation failed
  ── Failure ('test-run-r.R:111:3'): run_r loads integer64 methods for stored handles ──
  Expected `res@value` to match string "[1] 326 338".
  Actual text:
  x | Error: ! in callr subprocess.
    | Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
    | ! sandbox_init failed: compilation failed
  ── Failure ('test-run-r.R:125:3'): run_r returns plots as images and opens the display ──
  Expected `images` to have length 1.
  Actual length: 0.
  ── Error ('test-run-r.R:126:3'): run_r returns plots as images and opens the display ──
  <subscriptOutOfBoundsError/error/condition>
  Error in `images[[1]]`: subscript out of bounds
  Backtrace:
      ▆
   1. └─testthat::expect_identical(images[[1]]@type, "image/png") at test-run-r.R:126:3
   2.   └─testthat::quasi_label(enquo(object), label)
   3.     └─rlang::eval_bare(expr, quo_get_env(quo))
  ── Error ('test-run-r.R:163:3'): run_r collapses code and output above plots ───
  Error in `res@value[[1]]@text`: no applicable method for `@` applied to an object of class "character"
  Backtrace:
      ▆
   1. └─testthat::expect_match(res@value[[1]]@text, "private text") at test-run-r.R:163:3
   2.   └─testthat::quasi_label(enquo(object), label)
   3.     └─rlang::eval_bare(expr, quo_get_env(quo))
  ── Failure ('test-run-r.R:195:3'): run_r preloads measure sources for reading, comments included ──
  Expected `res@value` to match string "# count every order".
  Actual text:
  x | Error: ! in callr subprocess.
    | Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
    | ! sandbox_init failed: compilation failed
  ── Failure ('test-run-r.R:198:3'): run_r preloads measure sources for reading, comments included ──
  Expected `called@value` to match regexp "6".
  Actual text:
  x | Error: ! in callr subprocess.
    | Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
    | ! sandbox_init failed: compilation failed
  ── Failure ('test-run-r.R:208:3'): run_r delivers the citation request when no fallback tool has ──
  Expected `res@value` to match string "[1] 2".
  Actual text:
  x | Error: ! in callr subprocess.
    | Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
    | ! sandbox_init failed: compilation failed
    | 
    | With this most recent tool call, this turn is now based on outputs beyond trusted calculations. If trusted text you have seen supports your final answer, add a `<commons-citation>` block with one blockquote of the exact supporting text, following the citation rules given earlier. Otherwise, provide no citations.
  ── Failure ('test-run-r.R:219:3'): run_r surfaces errors from model code without failing the tool ──
  Expected `res@value` to match regexp "Error: boom".
  Actual text:
  x | Error: ! in callr subprocess.
    | Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
    | ! sandbox_init failed: compilation failed
  ── Failure ('test-run-r.R:221:3'): run_r surfaces errors from model code without failing the tool ──
  Expected `res@extra$display$html` to match string "#&gt; boom".
  Actual text:
  x | <div class="commons-run-r-display"><pre class="commons-run-r-code"><code class="language-r"><span class="hl kwd">stop</span><span class="hl def">(</span><span class="hl sng">'boom'</span><span class="hl def">)</span>
    | <span class="hl com">#&gt; ! in callr subprocess.</span>
    | <span class="hl com">#&gt; Caused by error in `(function (parent_tmp, work_dir, dll_path, network = &quot;none&quot;, ...`:</span>
    | <span class="hl com">#&gt; ! sandbox_init failed: compilation failed</span></code></pre></div>
  ── Failure ('test-run-r.R:232:3'): run_r displays code directly when it produces no output ──
  Expected `res@value` to match string "produced no output".
  Actual text:
  x | Error: ! in callr subprocess.
    | Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
    | ! sandbox_init failed: compilation failed
  ── Failure ('test-run-r.R:245:3'): run_r displays code directly when it produces no output ──
  Expected `res@extra$display$html` not to match string "#&gt;".
  Actual text:
  x | <div class="commons-run-r-display"><pre class="commons-run-r-code"><code class="language-r"><span class="hl def">x</span> <span class="hl kwb">&lt;-</span> <span class="hl num">1</span>
    | <span class="hl com">#&gt; ! in callr subprocess.</span>
    | <span class="hl com">#&gt; Caused by error in `(function (parent_tmp, work_dir, dll_path, network = &quot;none&quot;, ...`:</span>
    | <span class="hl com">#&gt; ! sandbox_init failed: compilation failed</span></code></pre></div>
  ── Failure ('test-run-r.R:281:3'): the worker cannot see parent-only environment variables ──
  Expected `res@value` to match regexp "FALSE".
  Actual text:
  x | Error: ! in callr subprocess.
    | Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
    | ! sandbox_init failed: compilation failed
  ── Failure ('test-run-r.R:291:3'): run_r interrupts code exceeding the time limit, keeping the session ──
  Expected `res@value` to match regexp "time limit".
  Actual text:
  x | Error: ! in callr subprocess.
    | Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
    | ! sandbox_init failed: compilation failed
  ── Failure ('test-run-r.R:294:3'): run_r interrupts code exceeding the time limit, keeping the session ──
  Expected `after@value` to match regexp "1".
  Actual text:
  x | Error: ! in callr subprocess.
    | Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
    | ! sandbox_init failed: compilation failed
  ── Failure ('test-run-r.R:304:3'): a crashed worker reports the crash and respawns on the next call ──
  Expected `res@value` to match regexp "crashed".
  Actual text:
  x | Error: ! in callr subprocess.
    | Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
    | ! sandbox_init failed: compilation failed
  ── Failure ('test-run-r.R:308:3'): a crashed worker reports the crash and respawns on the next call ──
  Expected `after@value` to match regexp "6".
  Actual text:
  x | Error: ! in callr subprocess.
    | Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
    | ! sandbox_init failed: compilation failed
  ── Failure ('test-run-r.R:319:3'): concurrent run_r calls take turns on the worker ──
  Expected `res[[2]]@value` to match regexp "20".
  Actual text:
  x | Error: ! in callr subprocess.
    | Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
    | ! sandbox_init failed: compilation failed
  ── Error ('test-sandbox.R:251:3'): an initialized worker is denied reads, writes, and sockets ──
  <callr_status_error/callr_error/rlib_error_3_0/rlib_error/error/condition>
  Error: ! in callr subprocess.
  Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
  ! sandbox_init failed: compilation failed
  Backtrace:
      ▆
   1. └─commons (local) sandboxed_worker_probes("auto") at test-sandbox.R:251:3
   2.   └─rs$run(...) at test-sandbox.R:158:3
   3.     └─callr:::rs_run(self, private, func, args, package)
   4.       └─throw(res$error)
  ── Error ('test-sandbox.R:287:3'): full network access leaves the filesystem sandboxed ──
  <callr_status_error/callr_error/rlib_error_3_0/rlib_error/error/condition>
  Error: ! in callr subprocess.
  Caused by error in `(function (parent_tmp, work_dir, dll_path, network = "none", ...`:
  ! sandbox_init failed: compilation failed
  Backtrace:
      ▆
   1. └─commons (local) sandboxed_worker_probes("auto", network = "full") at test-sandbox.R:287:3
   2.   └─rs$run(...) at test-sandbox.R:158:3
   3.     └─callr:::rs_run(self, private, func, args, package)
   4.       └─throw(res$error)
  
  [ FAIL 23 | WARN 0 | SKIP 86 | PASS 7189 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/ripley/R/packages/tests-devel/commons.Rcheck/00check.log’
for details.

      100.57 real       119.37 user        35.87 sys