* using log directory ‘/Users/ripley/R/packages/tests-devel/cobs.Rcheck’
* using R Under development (unstable) (2025-04-25 r88178)
* using platform: aarch64-apple-darwin24.4.0
* R was compiled by
Apple clang version 17.0.0 (clang-1700.0.13.3)
GNU Fortran (GCC) 14.2.0
* running under: macOS Sequoia 15.4.1
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘cobs/DESCRIPTION’ ... OK
* this is package ‘cobs’ version ‘1.3-9’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cobs’ can be installed ... OK
* used C compiler: ‘Apple clang version 17.0.0 (clang-1700.0.13.3)’
* used SDK: ‘MacOSX15.4.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘0_pt-ex.R’
Running ‘ex1.R’
Running ‘ex2-long.R’
Running ‘ex3.R’
Comparing ‘ex3.Rout’ to ‘ex3.Rout.save’ ...15,16c15,16
< Warning message:
< In cobs(weight, height, knots = weight, nknots = length(weight)) :
---
> Warning messages:
> 1: In cobs(weight, height, knots = weight, nknots = length(weight)) :
18a19,20
> 2: In cobs(weight, height, knots = weight, nknots = length(weight)) :
> drqssbc2(): Not all flags are normal (== 1), ifl : 18
Running ‘multi-constr.R’
Comparing ‘multi-constr.Rout’ to ‘multi-constr.Rout.save’ ...56a57,80
> Warning messages:
> 1: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
> tiny diagonals replaced with Inf when calling blkfct
>
> 2: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
> tiny diagonals replaced with Inf when calling blkfct
>
> 3: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
> tiny diagonals replaced with Inf when calling blkfct
>
> 4: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
> tiny diagonals replaced with Inf when calling blkfct
>
> 5: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
> tiny diagonals replaced with Inf when calling blkfct
>
> 6: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
> tiny diagonals replaced with Inf when calling blkfct
>
> 7: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
> tiny diagonals replaced with Inf when calling blkfct
>
> 8: In cobs(x, y, trace = 3) :
> drqssbc2(): Not all flags are normal (== 1), ifl : 18
136a161,178
> Warning in cobs(x, y, degree = 1, trace = 3) :
> The algorithm has not converged after 100 iterations
> Warning messages:
> 1: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
> tiny diagonals replaced with Inf when calling blkfct
>
> 2: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
> tiny diagonals replaced with Inf when calling blkfct
>
> 3: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
> tiny diagonals replaced with Inf when calling blkfct
>
> 4: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
> tiny diagonals replaced with Inf when calling blkfct
>
> 5: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
> tiny diagonals replaced with Inf when calling blkfct
>
180a223,229
> Warning messages:
> 1: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
> tiny diagonals replaced with Inf when calling blkfct
>
> 2: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) :
> tiny diagonals replaced with Inf when calling blkfct
>
Running ‘roof.R’
Comparing ‘roof.Rout’ to ‘roof.Rout.save’ ... OK
Running ‘small-ex.R’
Comparing ‘small-ex.Rout’ to ‘small-ex.Rout.save’ ...23a24,25
> Warning message:
> In cobs(x, y) : drqssbc2(): Not all flags are normal (== 1), ifl : 18
Running ‘spline-ex.R’
Comparing ‘spline-ex.Rout’ to ‘spline-ex.Rout.save’ ... OK
Running ‘temp.R’
Comparing ‘temp.Rout’ to ‘temp.Rout.save’ ...444a445,446
> Warning in cobs(year, temp, knots.add = TRUE, degree = 1, constraint = "none", :
> The algorithm has not converged after 100 iterations
453a456,457
> Warning in cobs(year, temp, nknots = 9, knots.add = TRUE, degree = 1, constraint = "none", :
> The algorithm has not converged after 100 iterations
459,460c463,464
< coef[1:5]: -0.40655906, -0.31473700, 0.05651823, -0.05681818, 0.28681956
< R^2 = 72.56% ; empirical tau (over all): 54/113 = 0.4778761 (target tau= 0.5)
---
> coef[1:5]: -0.39324840, -0.28115087, 0.05916295, -0.07465159, 0.31227753
> R^2 = 73.22% ; empirical tau (over all): 63/113 = 0.5575221 (target tau= 0.5)
465a470,473
>
> **** ERROR in algorithm: ifl = 18
>
>
467a476,478
> Warning message:
> In cobs(year, temp, nknots = length(a50$knots), knots = a50$knot, :
> drqssbc2(): Not all flags are normal (== 1), ifl : 18
469a481,482
> Warning in cobs(year, temp, nknots = length(a50$knots), knots = a50$knot, :
> The algorithm has not converged after 100 iterations
475c488,490
< [1] 10 18 21 22 47 61 68 74 78 79 102 111
---
> [1] 1 2 9 10 17 18 20 21 22 23 26 27 35 36 42 47 48 49 52
> [20] 53 58 59 61 62 63 64 65 68 73 74 78 79 80 81 82 83 84 88
> [39] 90 91 94 98 100 101 102 104 108 109 111 112
477c492,495
< [1] 5 8 25 38 39 50 54 77 85 97 113
---
> [1] 3 4 5 6 7 8 11 12 13 14 15 16 19 24 25 28 29 30 31
> [20] 32 33 34 37 38 39 40 41 43 44 45 46 50 51 54 55 56 57 60
> [39] 66 67 69 70 71 72 75 76 77 85 86 87 89 92 93 95 96 97 99
> [58] 103 105 106 107 110 113
Running ‘wind.R’
[14s/14s] NOTE
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE
See
‘/Users/ripley/R/packages/tests-devel/cobs.Rcheck/00check.log’
for details.
49.85 real 39.04 user 7.15 sys