* using log directory ‘/Users/ripley/R/packages/tests-devel/chromConverter.Rcheck’
* using R Under development (unstable) (2026-10-20 r90722)
* using platform: aarch64-apple-darwin27.0.0
* R was compiled by
    Apple clang version 21.0.0 (clang-2100.3.34.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Golden Gate 27.0.1
* using session charset: UTF-8
* current time: 2026-10-25 16:56:59 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘chromConverter/DESCRIPTION’ ... OK
* this is package ‘chromConverter’ version ‘0.11.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Packages suggested but not available for checking:
  'entab', 'chromConverterExtraTests'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘chromConverter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/11s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [14s/15s]
 [14s/15s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(chromConverter)
  > 
  > test_check("chromConverter")
  Saving _problems/test-read_chroms-612.R
  Saving _problems/test-read_chroms-670.R
  Saving _problems/test-read_chroms-934.R
  Saving _problems/test-utils-240.R
  [ FAIL 4 | WARN 37 | SKIP 202 | PASS 1379 ]
  
  ══ Skipped tests (202) ═════════════════════════════════════════════════════════
  • On CRAN (196): 'test-chrom_list-methods.R:13:3',
    'test-chrom_list-methods.R:37:3', 'test-chrom_list-methods.R:54:3',
    'test-chrom_list-methods.R:82:3', 'test-chrom_list-methods.R:516:3',
    'test-chrom_list-methods.R:565:3', 'test-extra-agilent.R:5:3',
    'test-extra-agilent.R:110:3', 'test-extra-agilent.R:170:3',
    'test-extra-agilent.R:239:3', 'test-extra-agilent.R:300:3',
    'test-extra-agilent.R:326:3', 'test-extra-agilent.R:391:3',
    'test-extra-agilent.R:446:3', 'test-extra-agilent.R:502:3',
    'test-extra-agilent.R:546:3', 'test-extra-agilent.R:574:3',
    'test-extra-agilent.R:602:3', 'test-extra-agilent.R:672:3',
    'test-extra-agilent.R:703:3', 'test-extra-agilent.R:733:3',
    'test-extra-agilent.R:833:3', 'test-extra-agilent.R:913:3',
    'test-extra-agilent.R:964:3', 'test-extra-agilent.R:1022:3',
    'test-extra-agilent.R:1081:3', 'test-extra-agilent.R:1136:3',
    'test-extra-agilent.R:1155:3', 'test-extra-agilent.R:1174:3',
    'test-extra-agilent.R:1215:3', 'test-extra-agilent.R:1239:3',
    'test-extra-agilent.R:1272:3', 'test-extra-agilent.R:1312:3',
    'test-extra-agilent.R:1350:3', 'test-extra-agilent.R:1383:3',
    'test-extra-agilent.R:1407:3', 'test-extra-agilent.R:1423:3',
    'test-extra-agilent.R:1455:3', 'test-extra-agilent.R:1468:3',
    'test-extra-agilent.R:1494:3', 'test-extra-agilent.R:1508:3',
    'test-extra-agilent.R:1548:3', 'test-extra-agilent.R:1578:3',
    'test-extra-agilent.R:1607:3', 'test-extra-agilent.R:1632:3',
    'test-extra-agilent.R:1652:3', 'test-extra-agilent.R:1691:3',
    'test-extra-agilent.R:1709:3', 'test-extra-agilent.R:1724:3',
    'test-extra-agilent.R:1743:3', 'test-extra-asm.R:5:3',
    'test-extra-asm.R:49:3', 'test-extra-asm.R:93:3', 'test-extra-asm.R:122:3',
    'test-extra-asm.R:141:3', 'test-extra-asm.R:163:3', 'test-extra-asm.R:204:3',
    'test-extra-asm.R:239:3', 'test-extra-asm.R:267:3', 'test-extra-asm.R:283:3',
    'test-extra-chromeleon.R:5:3', 'test-extra-chromeleon.R:50:3',
    'test-extra-chromeleon.R:86:3', 'test-extra-chromeleon.R:135:3',
    'test-extra-chromeleon.R:156:3', 'test-extra-export.R:6:3',
    'test-extra-export.R:33:3', 'test-extra-export.R:76:3',
    'test-extra-export.R:97:3', 'test-extra-export.R:109:3',
    'test-extra-export.R:161:3', 'test-extra-export.R:194:3',
    'test-extra-export.R:236:3', 'test-extra-misc.R:5:3',
    'test-extra-misc.R:34:3', 'test-extra-misc.R:64:3', 'test-extra-misc.R:76:3',
    'test-extra-misc.R:97:3', 'test-extra-misc.R:126:3',
    'test-extra-shimadzu.R:5:3', 'test-extra-shimadzu.R:23:3',
    'test-extra-shimadzu.R:98:3', 'test-extra-shimadzu.R:128:3',
    'test-extra-shimadzu.R:175:3', 'test-extra-shimadzu.R:192:3',
    'test-extra-shimadzu.R:230:3', 'test-extra-shimadzu.R:299:3',
    'test-extra-shimadzu.R:316:3', 'test-extra-shimadzu.R:346:3',
    'test-extra-shimadzu.R:441:3', 'test-extra-shimadzu.R:471:3',
    'test-extra-shimadzu.R:512:3', 'test-extra-shimadzu.R:533:3',
    'test-extra-shimadzu.R:545:3', 'test-extra-shimadzu.R:661:3',
    'test-extra-shimadzu.R:759:3', 'test-extra-shimadzu.R:791:3',
    'test-extra-shimadzu.R:823:3', 'test-extra-shimadzu.R:884:3',
    'test-extra-shimadzu.R:905:3', 'test-extra-shimadzu.R:929:3',
    'test-extra-shimadzu.R:964:3', 'test-extra-shimadzu.R:976:3',
    'test-extra-shimadzu.R:1061:3', 'test-extra-shimadzu.R:1113:3',
    'test-extra-shimadzu.R:1155:3', 'test-extra-shimadzu.R:1236:3',
    'test-extra-shimadzu.R:1284:3', 'test-extra-shimadzu.R:1321:3',
    'test-extra-shimadzu.R:1381:3', 'test-extra-shimadzu.R:1430:3',
    'test-extra-shimadzu.R:1452:3', 'test-extra-shimadzu.R:1492:3',
    'test-extra-shimadzu.R:1541:3', 'test-extra-shimadzu.R:1584:3',
    'test-extra-shimadzu.R:1596:3', 'test-extra-shimadzu.R:1635:3',
    'test-extra-shimadzu.R:1644:3', 'test-extra-shimadzu.R:1652:3',
    'test-extra-shimadzu.R:1662:3', 'test-extra-shimadzu.R:1691:3',
    'test-extra-shimadzu.R:1724:3', 'test-extra-shimadzu.R:1745:3',
    'test-extra-shimadzu.R:1775:3', 'test-extra-shimadzu.R:1808:3',
    'test-extra-shimadzu.R:1814:3', 'test-extra-shimadzu.R:1834:3',
    'test-extra-waters.R:5:3', 'test-extra-waters.R:41:3',
    'test-extra-waters.R:95:3', 'test-extra-waters.R:126:3',
    'test-read_cdf.R:16:3', 'test-read_cdf.R:100:3', 'test-read_cdf.R:116:3',
    'test-read_cdf.R:135:3', 'test-read_cdf.R:149:3', 'test-read_cdf.R:171:3',
    'test-read_cdf.R:192:3', 'test-read_cdf.R:267:3', 'test-read_cdf.R:288:3',
    'test-read_cdf.R:305:3', 'test-read_cdf.R:331:3', 'test-read_cdf.R:387:3',
    'test-read_cdf.R:423:3', 'test-read_chemstation_method.R:5:3',
    'test-read_chemstation_method.R:41:3', 'test-read_chemstation_method.R:55:3',
    'test-read_chemstation_method.R:65:3', 'test-read_chemstation_method.R:77:3',
    'test-read_chemstation_method.R:96:3',
    'test-read_chemstation_method.R:116:3',
    'test-read_chemstation_method.R:130:3',
    'test-read_chemstation_method.R:136:3', 'test-read_chemstation_reg.R:5:3',
    'test-read_chemstation_reg.R:32:3', 'test-read_chemstation_reg.R:43:3',
    'test-read_chemstation_reg.R:71:3', 'test-read_chemstation_reg.R:104:3',
    'test-read_chemstation_reg.R:115:3', 'test-read_chroms.R:324:3',
    'test-read_chroms.R:345:3', 'test-read_chroms.R:362:3',
    'test-read_chroms.R:379:3', 'test-read_chroms.R:497:3',
    'test-read_chroms.R:508:3', 'test-read_chroms.R:634:3',
    'test-read_chroms.R:944:3', 'test-utils.R:19:3', 'test-varian_sms.R:3:3',
    'test-varian_sms.R:64:3', 'test-varian_sms.R:78:3',
    'test-varian_sms.R:166:3', 'test-varian_sms.R:187:3',
    'test-varian_sms.R:206:3', 'test-varian_sms.R:240:3',
    'test-varian_sms.R:254:3', 'test-varian_sms.R:280:3',
    'test-varian_sms.R:302:3', 'test-write_chroms.R:16:3',
    'test-write_chroms.R:40:3', 'test-write_chroms.R:59:3',
    'test-write_chroms.R:78:3', 'test-write_chroms.R:112:3',
    'test-write_chroms.R:134:3', 'test-write_chroms.R:151:3',
    'test-write_chroms.R:166:3', 'test-write_chroms.R:182:3',
    'test-write_chroms.R:210:3', 'test-write_mzml.R:102:3',
    'test-write_mzml.R:471:3', 'test-write_mzml.R:502:3',
    'test-write_mzml.R:523:3', 'test-write_mzml.R:540:3',
    'test-write_mzml.R:563:3', 'test-write_mzml.R:641:3',
    'test-write_mzml.R:688:3'
  • could not locate the package sources (1): 'test-metadata_registry.R:30:3'
  • required packages rainbow not available for testing (1):
    'test-read_chroms.R:414:3'
  • {entab} is not installed (4): 'test-python.R:40:3', 'test-python.R:139:3',
    'test-read_chroms.R:258:3', 'test-read_chroms.R:1030:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-read_chroms.R:611:3'): read_peaklist reads the header of a 'ChemStation' sequence report ──
  Expected `attr(x, "run_datetime")` to equal `as.POSIXct("2015-10-13 13:23:19", tz = "UTC")`.
  Differences:
  `actual` is a character vector ('10/13/2015 1:23:19 PM')
  `expected` is an S3 object of class <POSIXct/POSIXt>, a double vector
  
  ── Failure ('test-read_chroms.R:669:3'): deprecated `data_format` argument to peak list readers still works ──
  Expected `z <- read_peaklist(path, format_in = "chemstation", peaktable_format = "original")` to run silently.
  Actual noise: warnings.
  ── Failure ('test-read_chroms.R:934:3'): read_peaklist sorts reports found in a directory by acquisition time ──
  Expected `names(x)[1:3]` to equal `c("MEOH", "BENZOS_1000PPM", "BENZOS_500PPM")`.
  Differences:
  `actual`:   "BENZOS_1000PPM" "BENZOS_125PPM"  "BENZOS_16PPM" 
  `expected`: "MEOH"           "BENZOS_1000PPM" "BENZOS_500PPM"
  
  ── Failure ('test-utils.R:240:3'): 'Shimadzu' ASCII date-times are read in any locale's format ──
  Expected `p("4/26/2021 11:01:11 PM")` to equal "2021-04-26 23:01:11".
  Differences:
  `actual`:   "2021-04-26 11:01:11"
  `expected`: "2021-04-26 23:01:11"
  
  
  [ FAIL 4 | WARN 37 | SKIP 202 | PASS 1379 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [9s/12s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/ripley/R/packages/tests-devel/chromConverter.Rcheck/00check.log’
for details.

       81.20 real        63.18 user        11.99 sys