* using log directory ‘/Users/ripley/R/packages/tests-devel/cassowaryr.Rcheck’
* using R Under development (unstable) (2023-09-29 r85235)
* using platform: aarch64-apple-darwin23.0.0
* R was compiled by
    Apple clang version 15.0.0 (clang-1500.0.40.1)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Sonoma 14.0
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘cassowaryr/DESCRIPTION’ ... OK
* this is package ‘cassowaryr’ version ‘2.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cassowaryr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ...Warning: elapsed-time limit of 30 minutes reached for sub-process
 [0m/30m] ERROR
Running examples in ‘cassowaryr-Ex.R’ failed
The error most likely occurred in:

> ### Name: calc_scags
> ### Title: Compute selected scagnostics on subsets
> ### Aliases: calc_scags
> 
> ### ** Examples
> 
> # Calculate selected scagnostics on a single pair
> calc_scags(anscombe$x1, anscombe$y1, scags=c("monotonic", "outlying"))
The legacy packages maptools, rgdal, and rgeos, underpinning the sp package,
which was just loaded, will retire in October 2023.
Please refer to R-spatial evolution reports for details, especially
https://r-spatial.org/r/2023/05/15/evolution4.html.
It may be desirable to make the sf package available;
package maintainers should consider adding sf to Suggests:.
The sp package is now running under evolution status 2
     (status 2 uses the sf package in place of rgdal)
# A tibble: 1 × 2
  outlying monotonic
     <dbl>     <dbl>
1        0     0.818
> 
> # Compute on long form data, or subsets
> # defined by a categorical variable
> require(dplyr)
Loading required package: dplyr

Attaching package: ‘dplyr’

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

> datasaurus_dozen %>%
+   group_by(dataset) %>%
+   summarise(calc_scags(x,y, scags=c("monotonic", "outlying", "convex")))

 *** caught segfault ***
address 0x117800000, cause 'invalid permissions'

 *** caught bus error ***
address 0x113d0d298, cause 'invalid alignment'
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’/Users/ripley/R/R-devel/bin/BATCH: line 60: 99106 Cputime limit exceeded: 24  ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1
 [42m/42m]
 [42m/42m] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(cassowaryr)
  > 
  > test_check("cassowaryr")
  
  Attaching package: 'dplyr'
  
  The following object is masked from 'package:testthat':
  
      matches
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  The legacy packages maptools, rgdal, and rgeos, underpinning the sp package,
  which was just loaded, will retire in October 2023.
  Please refer to R-spatial evolution reports for details, especially
  https://r-spatial.org/r/2023/05/15/evolution4.html.
  It may be desirable to make the sf package available;
  package maintainers should consider adding sf to Suggests:.
  The sp package is now running under evolution status 2
       (status 2 uses the sf package in place of rgdal)
  
   *** caught segfault ***
  address 0x11e000000, cause 'invalid permissions'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ...sh: line 1: 15739 Cputime limit exceeded: 24  R_LIBS=/var/folders/pk/n4bndnt1287ctrd_ftthnnnr0000gp/T//Rtmp6lz4pO/RLIBS_14a4669f31a29 R_ENVIRON_USER='' R_LIBS_USER='NULL' R_LIBS_SITE='NULL' '/Users/ripley/R/R-devel/bin/R' --vanilla --no-echo > '/Users/ripley/R/packages/tests-devel/cassowaryr.Rcheck/build_vignettes.log' 2>&1 < '/var/folders/pk/n4bndnt1287ctrd_ftthnnnr0000gp/T//Rtmp6lz4pO/file14a463e70a79'
Warning: elapsed-time limit of 1.5 hours reached for sub-process
 [90m/90m] ERROR
Error(s) in re-building vignettes:
--- re-building ‘cassowaryr.Rmd’ using rmarkdown

 *** caught segfault ***
address 0x138800000, cause 'invalid permissions'

* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 3 ERRORs
See
  ‘/Users/ripley/R/packages/tests-devel/cassowaryr.Rcheck/00check.log’
for details.

     9779.69 real      1367.57 user      6580.05 sys