* using log directory ‘/Users/ripley/R/packages/tests-devel/casebase.Rcheck’
* using R Under development (unstable) (2026-07-28 r90311)
* using platform: aarch64-apple-darwin25.5.0
* R was compiled by
    Apple clang version 21.0.0 (clang-2100.1.1.101)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.6
* using session charset: UTF-8
* current time: 2026-07-28 17:17:06 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘casebase/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘casebase’ version ‘0.10.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘casebase’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [16s/16s]
 [16s/16s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(casebase)
  See example usage at http://sahirbhatnagar.com/casebase/
  > library(data.table)
  
  Attaching package: 'data.table'
  
  The following object is masked from 'package:base':
  
      %notin%
  
  > library(survival)
  > 
  > test_check("casebase")
  Saving _problems/test-plotSingleEventCB-39.R
  [ FAIL 1 | WARN 16 | SKIP 1 | PASS 255 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • GBM is not implemented (1): 'test-gbm.R:4:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-plotSingleEventCB.R:39:5'): no error in plot method for singleEventCB objects - hazard function ──
  Expected `inherits(outglm, "try-error")` to be FALSE.
  Differences:
  `actual`:   TRUE 
  `expected`: FALSE
  
  
  [ FAIL 1 | WARN 16 | SKIP 1 | PASS 255 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [35s/38s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘competingRisk.Rmd’ using rmarkdown
--- finished re-building ‘competingRisk.Rmd’

--- re-building ‘customizingpopTime.Rmd’ using rmarkdown
--- finished re-building ‘customizingpopTime.Rmd’

--- re-building ‘plotabsRisk.Rmd’ using rmarkdown
--- finished re-building ‘plotabsRisk.Rmd’

--- re-building ‘plotsmoothHazard.Rmd’ using rmarkdown

Quitting from plotsmoothHazard.Rmd:68-81 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_dots_nonempty>
Error in `plot()`:
! `...` must be empty.
✖ Problematic arguments:
• print.cond = TRUE
• main = "No Hormonal Therapy Hazard Function"
---
Backtrace:
    ▆
 1. ├─base::plot(...)
 2. └─casebase:::plot.singleEventCB(...)
 3.   ├─base::do.call(...)
 4.   └─visreg (local) `<fn>`(...)
 5.     └─visreg:::finalize_visreg(v, plot, ...)
 6.       ├─base::plot(v, ...)
 7.       └─visreg:::plot.visreg(v, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'plotsmoothHazard.Rmd' failed with diagnostics:
`...` must be empty.
✖ Problematic arguments:
• print.cond = TRUE
• main = "No Hormonal Therapy Hazard Function"
--- failed re-building ‘plotsmoothHazard.Rmd’

--- re-building ‘popTime.Rmd’ using rmarkdown
--- finished re-building ‘popTime.Rmd’

--- re-building ‘smoothHazard.Rmd’ using rmarkdown

Quitting from smoothHazard.Rmd:121-125 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_dots_nonempty>
Error in `FUN()`:
! `...` must be empty.
✖ Problematic argument:
• print.cond = TRUE
---
Backtrace:
     ▆
  1. ├─base::plot(model4, hazard.params = list(alpha = 0.05))
  2. └─casebase:::plot.singleEventCB(model4, hazard.params = list(alpha = 0.05))
  3.   ├─base::do.call(...)
  4.   └─visreg (local) `<fn>`(...)
  5.     └─visreg:::finalize_visreg(v, plot, ...)
  6.       ├─base::plot(v, ...)
  7.       └─visreg:::plot.visreg_list(v, ...)
  8.         ├─base::structure(...)
  9.         └─base::lapply(x, plot, ...)
 10.           ├─base (local) FUN(X[[i]], ...)
 11.           └─visreg:::plot.visreg(X[[i]], ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'smoothHazard.Rmd' failed with diagnostics:
`...` must be empty.
✖ Problematic argument:
• print.cond = TRUE
--- failed re-building ‘smoothHazard.Rmd’

--- re-building ‘time-varying-covariates.Rmd’ using rmarkdown
--- finished re-building ‘time-varying-covariates.Rmd’

SUMMARY: processing the following files failed:
  ‘plotsmoothHazard.Rmd’ ‘smoothHazard.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs
See
  ‘/Users/ripley/R/packages/tests-devel/casebase.Rcheck/00check.log’
for details.

      103.64 real        85.55 user        11.34 sys