* using log directory ‘/Users/ripley/R/packages/tests-devel/VSURF.Rcheck’
* using R Under development (unstable) (2024-04-17 r86441)
* using platform: aarch64-apple-darwin23.4.0
* R was compiled by
    Apple clang version 15.0.0 (clang-1500.3.9.4)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Sonoma 14.4.1
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘VSURF/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘VSURF’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘VSURF’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(VSURF)
  > 
  > test_check("VSURF")
  [ FAIL 8 | WARN 1 | SKIP 0 | PASS 14 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_orange.R:32:3'): Variable importance ─────────────────────────
  orange.vsurf$imp.mean.dec not equal to c(...).
  9/9 mismatches (average diff: 10.3)
  [1] 2956.4 - 2954.5 ==   1.96
  [2]  201.3 -  216.3 == -14.95
  [3]  101.2 -   75.1 ==  26.08
  [4]   13.9 -   19.9 ==  -6.06
  [5]  -13.2 -  -24.7 ==  11.55
  [6]  -29.6 -  -32.0 ==   2.37
  [7]  -29.9 -  -39.0 ==   9.13
  [8]  -36.7 -  -40.3 ==   3.59
  [9]  -37.8 -  -54.5 ==  16.73
  ── Failure ('test_orange.R:36:3'): Variable importance ─────────────────────────
  orange.vsurf$imp.sd.dec not equal to c(...).
  9/9 mismatches (average diff: 13.9)
  [1] 266.5 - 200.8 == 65.666
  [2]  51.2 -  59.5 == -8.212
  [3]  98.2 -  65.9 == 32.241
  [4]  52.6 -  55.7 == -3.123
  [5]  61.6 -  58.0 ==  3.610
  [6]  46.8 -  44.2 ==  2.633
  [7]  57.5 -  57.1 ==  0.374
  [8]  39.1 -  46.9 == -7.797
  [9]  41.2 -  42.4 == -1.175
  ── Failure ('test_orange.R:40:3'): Variable importance ─────────────────────────
  orange.vsurf$imp.mean.dec.ind not identical to c(2L, 1L, 5L, 8L, 7L, 3L, 6L, 9L, 4L).
  4/9 mismatches (average diff: 3.5)
  [5] 6 - 7 == -1
  [6] 9 - 3 ==  6
  [7] 7 - 6 ==  1
  [8] 3 - 9 == -6
  ── Failure ('test_orange.R:48:3'): OOB erros of nested models ──────────────────
  orange.vsurf$err.interp not equal to c(723.4782, 447.9998, 779.2947).
  3/3 mismatches (average diff: 2.08)
  [1] 723 - 723 == -0.317
  [2] 447 - 448 == -1.053
  [3] 774 - 779 == -4.860
  ── Failure ('test_orange.R:51:3'): OOB erros of nested models ──────────────────
  orange.vsurf$err.pred not equal to 721.4986.
  1/1 mismatches
  [1] 721 - 721 == -0.483
  ── Failure ('test_orange.R:58:3'): Thresholds for the 3 steps ──────────────────
  min(orange.vsurf$pred.pruned.tree) not equal to 42.413.
  1/1 mismatches
  [1] 56 - 42.4 == 13.6
  ── Failure ('test_orange.R:60:3'): Thresholds for the 3 steps ──────────────────
  orange.vsurf$sd.min not equal to 16.85953.
  1/1 mismatches
  [1] 19 - 16.9 == 2.13
  ── Failure ('test_orange.R:61:3'): Thresholds for the 3 steps ──────────────────
  orange.vsurf$mean.jump not equal to 331.2949.
  1/1 mismatches
  [1] 327 - 331 == -3.81
  
  [ FAIL 8 | WARN 1 | SKIP 0 | PASS 14 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/ripley/R/packages/tests-devel/VSURF.Rcheck/00check.log’
for details.

       19.16 real        15.31 user         3.05 sys