* using log directory ‘/Users/ripley/R/packages/tests-devel/TreeLS.Rcheck’ * using R Under development (unstable) (2021-01-30 r79911) * using platform: aarch64-apple-darwin20.2.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘TreeLS/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘TreeLS’ version ‘2.0.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TreeLS’ can be installed ... [45s/46s] OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘mathjaxr’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [11s/14s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [9s/22s] ERROR Running examples in ‘TreeLS-Ex.R’ failed The error most likely occurred in: > ### Name: nnFilter > ### Title: Nearest neighborhood point filter > ### Aliases: nnFilter > > ### ** Examples > > file = system.file("extdata", "spruce.laz", package="TreeLS") > tls = readTLS(file) > nrow(tls@data) [1] 83392 > > nn_tls = nnFilter(tls, 0.05, 3) sh: sysctl: command not found Unable to detect your RAM. # nocov Please raise an issue at https://github.com/csgillespie/benchmarkme Error in if (can_malloc < 0) { : missing value where TRUE/FALSE needed Calls: nnFilter -> sizeCheck Execution halted * checking PDF version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/Users/ripley/R/packages/tests-devel/TreeLS.Rcheck/00check.log’ for details. 124.65 real 107.27 user 9.46 sys