* using log directory ‘/Users/ripley/R/packages/tests-devel/TreatmentPatterns.Rcheck’ * using R Under development (unstable) (2026-01-28 r89342) * using platform: aarch64-apple-darwin25.2.0 * R was compiled by Apple clang version 17.0.0 (clang-1700.6.3.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.2 * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘TreatmentPatterns/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘TreatmentPatterns’ version ‘3.1.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TreatmentPatterns’ can be installed ... OK * checking installed package size ... INFO installed size is 7.0Mb sub-directories of 1Mb or more: doc 5.0Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [38s/41s] [38s/41s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [35s/129s] ERROR Error(s) in re-building vignettes: --- re-building ‘a000_bestPractices.Rmd’ using rmarkdown --- finished re-building ‘a000_bestPractices.Rmd’ --- re-building ‘a001_DefiningCohorts.Rmd’ using rmarkdown --- finished re-building ‘a001_DefiningCohorts.Rmd’ --- re-building ‘a010_Computing_Pathways.Rmd’ using rmarkdown trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/GiBleed_5.3.zip' Quitting from a010_Computing_Pathways.Rmd:83-103 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `utils::download.file()`: ! cannot open URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/GiBleed_5.3.zip' --- Backtrace: ▆ 1. ├─DBI::dbConnect(drv = duckdb(), dbdir = eunomiaDir()) 2. ├─duckdb::dbConnect(drv = duckdb(), dbdir = eunomiaDir()) 3. │ └─duckdb (local) .local(drv, ...) 4. │ └─duckdb:::path_normalize(dbdir) 5. └─CDMConnector::eunomiaDir() 6. └─CDMConnector::downloadEunomiaData(...) 7. ├─withr::with_options(...) 8. │ └─base::force(code) 9. └─utils::download.file(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'a010_Computing_Pathways.Rmd' failed with diagnostics: cannot open URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/GiBleed_5.3.zip' --- failed re-building ‘a010_Computing_Pathways.Rmd’ --- re-building ‘a020_Exporting.Rmd’ using rmarkdown --- finished re-building ‘a020_Exporting.Rmd’ --- re-building ‘a030_Evaluating_Output.Rmd’ using rmarkdown trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/GiBleed_5.3.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB adding: analyses.csv (stored 0%) adding: arguments.csv (deflated 62%) adding: attrition.csv (deflated 59%) adding: cdm_source_info.csv (deflated 45%) adding: counts_age.csv (deflated 84%) adding: counts_sex.csv (deflated 36%) adding: counts_year.csv (deflated 83%) adding: metadata.csv (deflated 24%) adding: summary_event_duration.csv (deflated 75%) adding: treatment_pathways.csv (deflated 95%) --- finished re-building ‘a030_Evaluating_Output.Rmd’ --- re-building ‘a999_Strategus.Rmd’ using rmarkdown --- finished re-building ‘a999_Strategus.Rmd’ SUMMARY: processing the following file failed: ‘a010_Computing_Pathways.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/Users/ripley/R/packages/tests-devel/TreatmentPatterns.Rcheck/00check.log’ for details. 202.96 real 92.82 user 11.89 sys