* using log directory ‘/Users/ripley/R/packages/tests-devel/TOU.Rcheck’ * using R Under development (unstable) (2026-03-08 r89575) * using platform: aarch64-apple-darwin25.3.0 * R was compiled by Apple clang version 21.0.0 (clang-2100.0.121.2) GNU Fortran (GCC) 14.2.0 * running under: macOS Tahoe 26.3.1 * using session charset: UTF-8 * current time: 2026-03-09 01:40:48 UTC * using option ‘--no-stop-on-test-error’ * checking for file ‘TOU/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘TOU’ version ‘0.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TOU’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ERROR Running examples in ‘TOU-Ex.R’ failed The error most likely occurred in: > ### Name: draw.model.tou > ### Title: A plot with the experimental data and the Transformed > ### Ornstein-Uhlenbeck (TOU) model. > ### Aliases: draw.model.tou > > ### ** Examples > > > # an example with one trajectory of experimental adsorption > observed.time <- c(0, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 150, 200, + 250, 300) > observed.values <- c(0, 1.684, 2.341, 2.581, 2.842, 2.890, 2.959, 3.042, + 3.083, 3.043, 3.017, 2.954, 2.996, 2.886, 2.844) > observed.process <- cbind(observed.time, observed.values) > # fitting the model without any fixed parameters > result <- fit.model.tou(w=observed.process) > # default units time in minutes and default units adsorption in mg/g > draw.model.tou(result) > # changing units time to seconds and units adsorption to mg/mmol > draw.model.tou(result, time.unit="seconds", adsorption.unit="mg/mmol") > > observed.time <- c(0, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 150, 200, + 250, 300) > observed.values.1 <- c(0, 1.684, 2.341, 2.581, 2.842, 2.890, 2.959, 3.042, + 3.083, 3.043, 3.017, 2.954, 2.996, 2.886, 2.844) > observed.values.2 <- c(0, 1.618, 2.217, 2.571, 2.763, 2.841, 2.866, 2.898, + 2.935, 2.973, 2.906, 2.919, 2.910, 3.012, 3.071) > observed.values.3 <- c(0, 1.596, 2.333, 2.611, 2.750, 2.731, 2.829, 2.838, + 2.864, 2.884, 2.886, 2.911, 2.896, 2.877, 2.969) > observed.processes <- cbind(observed.time, observed.values.1, + observed.values.2, observed.values.3) > # fitting the model without any fixed parameters > result <- fit.model.tou(w=observed.processes) Error in stats::optim(par = as.numeric(DE.salida$optim$bestmem), fn = ll.process, : L-BFGS-B needs finite values of 'fn' Calls: fit.model.tou -> Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/Users/ripley/R/packages/tests-devel/TOU.Rcheck/00check.log’ for details. 21.45 real 17.13 user 3.53 sys