* using log directory ‘/Users/ripley/R/packages/tests-devel/GPFDA.Rcheck’ * using R Under development (unstable) (2024-09-30 r87204) * using platform: aarch64-apple-darwin24.0.0 * R was compiled by Apple clang version 16.0.0 (clang-1600.0.26.3) GNU Fortran (GCC) 14.1.0 * running under: macOS Sequoia 15.0 * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘GPFDA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘GPFDA’ version ‘3.1.3’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GPFDA’ can be installed ... [20s/21s] OK * used C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.3)’ * used SDK: ‘MacOSX15.0.sdk’ * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [1m/61m] ERROR Error(s) in re-building vignettes: --- re-building ‘co2.Rmd’ using rmarkdown --- finished re-building ‘co2.Rmd’ --- re-building ‘gpfr.Rmd’ using rmarkdown --- finished re-building ‘gpfr.Rmd’ --- re-building ‘gpr_ex1.Rmd’ using rmarkdown --- finished re-building ‘gpr_ex1.Rmd’ --- re-building ‘gpr_ex2.Rmd’ using rmarkdown --- finished re-building ‘gpr_ex2.Rmd’ --- re-building ‘mgpr.Rmd’ using rmarkdown --- finished re-building ‘mgpr.Rmd’ Warning: elapsed-time limit of 1 hours reached for sub-process --- re-building ‘nsgpr.Rmd’ using rmarkdown SUMMARY: processing the following file failed: ‘nsgpr.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/Users/ripley/R/packages/tests-devel/GPFDA.Rcheck/00check.log’ for details. 3711.84 real 77.54 user 10.07 sys