* installing *source* package ‘DLCA’ ... ** this is package ‘DLCA’ version ‘1.0’ ** package ‘DLCA’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 21.0.0 (clang-2100.1.1.101)’ using SDK: ‘MacOSX26.5.sdk’ clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include -fPIC -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:79: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/sugar.h:33: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/functions.h:63: /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:38:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 38 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:44:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 44 | s += t/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:68:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 68 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:69:15: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 69 | si /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:77:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 77 | s += t/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:78:22: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 78 | si += ti/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:104:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 104 | s /= n; // no overflow correction needed for logical vectors | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:122:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 122 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:128:16: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 128 | s += t/n; | ~^ In file included from RcppExports.cpp:4: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:93: /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:399:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 399 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:407:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 407 | s += t / n; | ~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:426:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 426 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:435:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 435 | s += t / n; | ~ ^ 13 warnings generated. clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include -fPIC -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -c lcaData.cpp -o lcaData.o In file included from lcaData.cpp:2: In file included from ./dlcaVerbose.h:4: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:79: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/sugar.h:33: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/functions.h:63: /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:38:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 38 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:44:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 44 | s += t/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:68:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 68 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:69:15: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 69 | si /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:77:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 77 | s += t/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:78:22: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 78 | si += ti/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:104:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 104 | s /= n; // no overflow correction needed for logical vectors | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:122:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 122 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:128:16: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 128 | s += t/n; | ~^ In file included from lcaData.cpp:2: In file included from ./dlcaVerbose.h:4: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:93: /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:399:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 399 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:407:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 407 | s += t / n; | ~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:426:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 426 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:435:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 435 | s += t / n; | ~ ^ lcaData.cpp:162:27: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32] 162 | uniqueN = patternCounts.size(); | ~ ~~~~~~~~~~~~~~^~~~~~ 14 warnings generated. clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include -fPIC -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -c lcaFit.cpp -o lcaFit.o In file included from lcaFit.cpp:1: In file included from ./lcaFit.h:4: In file included from ./lcaModel.h:4: In file included from ./lcaCommon.h:4: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:79: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/sugar.h:33: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/functions.h:63: /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:38:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 38 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:44:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 44 | s += t/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:68:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 68 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:69:15: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 69 | si /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:77:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 77 | s += t/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:78:22: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 78 | si += ti/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:104:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 104 | s /= n; // no overflow correction needed for logical vectors | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:122:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 122 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:128:16: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 128 | s += t/n; | ~^ In file included from lcaFit.cpp:1: In file included from ./lcaFit.h:4: In file included from ./lcaModel.h:4: In file included from ./lcaCommon.h:4: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:93: /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:399:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 399 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:407:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 407 | s += t / n; | ~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:426:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 426 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:435:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 435 | s += t / n; | ~ ^ lcaFit.cpp:499:117: warning: implicit conversion from 'rep' (aka 'long long') to 'double' may lose precision [-Wimplicit-int-float-conversion] 499 | if (dlcaVerbose()) dlcaConsole() << " (" << (std::chrono::duration_cast(end - begin).count()) / 1000000.0 << " sec.)" << std::endl << std::endl; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ ~ lcaFit.cpp:601:115: warning: implicit conversion from 'rep' (aka 'long long') to 'double' may lose precision [-Wimplicit-int-float-conversion] 601 | if (dlcaVerbose()) dlcaConsole() << " (" << (std::chrono::duration_cast(end - begin).count()) / 1000000.0 << " sec.)" << std::endl << std::endl; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ ~ lcaFit.cpp:719:115: warning: implicit conversion from 'rep' (aka 'long long') to 'double' may lose precision [-Wimplicit-int-float-conversion] 719 | if (dlcaVerbose()) dlcaConsole() << " (" << (std::chrono::duration_cast(end - begin).count()) / 1000000.0 << " sec.)" << std::endl << std::endl; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ ~ 16 warnings generated. clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include -fPIC -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -c lcaModel.cpp -o lcaModel.o In file included from lcaModel.cpp:1: In file included from ./lcaModel.h:4: In file included from ./lcaCommon.h:4: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:79: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/sugar.h:33: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/functions.h:63: /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:38:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 38 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:44:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 44 | s += t/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:68:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 68 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:69:15: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 69 | si /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:77:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 77 | s += t/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:78:22: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 78 | si += ti/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:104:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 104 | s /= n; // no overflow correction needed for logical vectors | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:122:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 122 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:128:16: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 128 | s += t/n; | ~^ In file included from lcaModel.cpp:1: In file included from ./lcaModel.h:4: In file included from ./lcaCommon.h:4: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:93: /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:399:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 399 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:407:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 407 | s += t / n; | ~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:426:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 426 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:435:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 435 | s += t / n; | ~ ^ lcaModel.cpp:88:13: warning: implicit conversion loses integer precision: '__iter_diff_t>' (aka 'long') to 'int' [-Wshorten-64-to-32] 88 | int cnt = count(existingValues.begin(), existingValues.end(), value); | ~~~ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include -fPIC -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -c lcaRcpp.cpp -o lcaRcpp.o 14 warnings generated. clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include -fPIC -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -c lcaStarts.cpp -o lcaStarts.o In file included from lcaRcpp.cpp:20: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:79: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/sugar.h:33: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/functions.h:63: /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:38:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 38 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:44:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 44 | s += t/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:68:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 68 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:69:15: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 69 | si /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:77:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 77 | s += t/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:78:22: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 78 | si += ti/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:104:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 104 | s /= n; // no overflow correction needed for logical vectors | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:122:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 122 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:128:16: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 128 | s += t/n; | ~^ In file included from lcaRcpp.cpp:20: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:93: /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:399:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 399 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:407:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 407 | s += t / n; | ~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:426:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 426 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:435:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 435 | s += t / n; | ~ ^ lcaRcpp.cpp:929:26: warning: implicit conversion turns floating-point number into integer: 'typename storage_type<14>::type' (aka 'double') to 'value_type' (aka 'int') [-Wfloat-conversion] 929 | dataMatrix[i][j] = xcpp(i,j); | ~ ^~~~~~~~~ In file included from lcaRcpp.cpp:20: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:41: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/Vector.h:57: /Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Matrix.h:138:76: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32] 138 | return static_cast< Vector* >( this )->operator[]( offset( i, j ) ) ; | ~~~~~~ ^ lcaRcpp.cpp:105:46: note: in instantiation of member function 'Rcpp::Matrix<14>::operator()' requested here 105 | const int value = static_cast(xcpp(i, j)); | ^ In file included from lcaRcpp.cpp:20: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:41: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/Vector.h:57: /Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Matrix.h:138:73: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32] 138 | return static_cast< Vector* >( this )->operator[]( offset( i, j ) ) ; | ~~~~~~ ^ In file included from lcaStarts.cpp:1: In file included from ./lcaStarts.h:6: In file included from ./lcaCommon.h:4: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:79: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/sugar.h:33: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/functions.h:63: /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:38:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 38 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:44:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 44 | s += t/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:68:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 68 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:69:15: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 69 | si /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:77:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 77 | s += t/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:78:22: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 78 | si += ti/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:104:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 104 | s /= n; // no overflow correction needed for logical vectors | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:122:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 122 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:128:16: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 128 | s += t/n; | ~^ In file included from lcaStarts.cpp:1: In file included from ./lcaStarts.h:6: In file included from ./lcaCommon.h:4: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:93: /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:399:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 399 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:407:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 407 | s += t / n; | ~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:426:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 426 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:435:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 435 | s += t / n; | ~ ^ lcaStarts.cpp:51:69: warning: implicit conversion from 'size_type' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 51 | const long double uniform = probs.empty() ? 0.0L : 1.0L / probs.size(); | ~ ~~~~~~^~~~~~ 14 warnings generated. clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I'/Users/ripley/R/Library/Rcpp/include' -isystem /opt/R/arm64/include -fPIC -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -c sourceCppDLC.cpp -o sourceCppDLC.o In file included from sourceCppDLC.cpp:1: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:79: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/sugar.h:33: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/functions.h:63: /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:38:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 38 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:44:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 44 | s += t/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:68:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 68 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:69:15: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 69 | si /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:77:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 77 | s += t/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:78:22: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 78 | si += ti/n; | ~^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:104:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 104 | s /= n; // no overflow correction needed for logical vectors | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:122:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 122 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:128:16: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 128 | s += t/n; | ~^ In file included from sourceCppDLC.cpp:1: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:93: /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:399:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 399 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:407:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 407 | s += t / n; | ~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:426:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 426 | s /= n; | ~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:435:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion] 435 | s += t / n; | ~ ^ In file included from sourceCppDLC.cpp:2: ./dlcFunctions.h:1550:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] 1550 | if((exists[k] == 1) & (isSplit[k] == 0)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | && ./dlcFunctions.h:1550:16: note: cast one or both operands to int to silence this warning In file included from sourceCppDLC.cpp:4: ./dlcResultBuilder.h:38:55: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'const int' [-Wshorten-64-to-32] 38 | Rcpp::NumericMatrix postOut(parameters.posteriors.size(), parameters.nclass); | ~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 16 warnings generated. sourceCppDLC.cpp:43:28: warning: implicit conversion turns floating-point number into integer: 'const typename storage_type<14>::type' (aka 'const double') to 'value_type' (aka 'int') [-Wfloat-conversion] 43 | datmat[i][j] = xcpp(i,j); | ~ ^~~~~~~~~ sourceCppDLC.cpp:158:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] 158 | if((exists[k] == 1) & (isSplit[k] == 0) & (isChecked[k] == 0)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | && sourceCppDLC.cpp:158:12: note: cast one or both operands to int to silence this warning sourceCppDLC.cpp:158:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] 158 | if((exists[k] == 1) & (isSplit[k] == 0) & (isChecked[k] == 0)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | && sourceCppDLC.cpp:158:12: note: cast one or both operands to int to silence this warning sourceCppDLC.cpp:211:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] 211 | if((state.exists[k] == 1) & (state.isChecked[k] == 0)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | && sourceCppDLC.cpp:211:12: note: cast one or both operands to int to silence this warning sourceCppDLC.cpp:224:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] 224 | if((state.exists[k] == 1) & (state.isSplit[k] == 0)) nclassEnd++; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | && sourceCppDLC.cpp:224:12: note: cast one or both operands to int to silence this warning sourceCppDLC.cpp:683:40: warning: implicit conversion from 'rep' (aka 'long long') to 'double' may lose precision [-Wimplicit-int-float-conversion] 682 | double elapsedSeconds = std::chrono::duration_cast( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 | procedureEnd - procedureStart).count() / 1000000.0; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ ~ In file included from sourceCppDLC.cpp:1: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:41: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/Vector.h:57: /Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Matrix.h:138:76: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32] 138 | return static_cast< Vector* >( this )->operator[]( offset( i, j ) ) ; | ~~~~~~ ^ ./dlcResultBuilder.h:25:25: note: in instantiation of member function 'Rcpp::Matrix<14>::operator()' requested here 25 | condpOut(pos, m) = parameters.condp[k][j][m]; | ^ In file included from sourceCppDLC.cpp:1: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:41: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/Vector.h:57: /Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Matrix.h:138:73: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32] 138 | return static_cast< Vector* >( this )->operator[]( offset( i, j ) ) ; | ~~~~~~ ^ /Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Matrix.h:141:83: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32] 141 | return static_cast< const Vector* >( this )->operator[]( offset( i, j ) ) ; | ~~~~~~ ^ sourceCppDLC.cpp:43:32: note: in instantiation of member function 'Rcpp::Matrix<14>::operator()' requested here 43 | datmat[i][j] = xcpp(i,j); | ^ In file included from sourceCppDLC.cpp:1: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:41: In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/Vector.h:57: /Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Matrix.h:141:80: warning: implicit conversion loses integer precision: 'const size_t' (aka 'const unsigned long') to 'int' [-Wshorten-64-to-32] 141 | return static_cast< const Vector* >( this )->operator[]( offset( i, j ) ) ; | ~~~~~~ ^ 25 warnings generated. clang++ -mmacos-version-min=26 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Users/ripley/R/R-devel/lib -L/opt/R/arm64/lib -o DLCA.so RcppExports.o lcaData.o lcaFit.o lcaModel.o lcaRcpp.o lcaStarts.o sourceCppDLC.o -L/Users/ripley/R/R-devel/lib -lR installing to /Users/ripley/R/packages/tests-devel/DLCA.Rcheck/00LOCK-DLCA/00new/DLCA/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DLCA)