* using log directory ‘/Users/ripley/R/packages/tests-devel/DALEX.Rcheck’ * using R Under development (unstable) (2024-04-09 r86373) * using platform: aarch64-apple-darwin23.4.0 * R was compiled by Apple clang version 15.0.0 (clang-1500.3.9.4) GNU Fortran (GCC) 12.2.0 * running under: macOS Sonoma 14.4.1 * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘DALEX/DESCRIPTION’ ... OK * this is package ‘DALEX’ version ‘2.4.3’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DALEX’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) plot.model_parts.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.model_parts.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.model_parts.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.model_parts.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.model_parts.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.model_parts.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.model_profile.Rd:21-22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) plot.model_profile.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) plot.model_profile.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) plot.model_profile.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) plot.model_profile.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) plot.model_profile.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) plot.model_profile.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) plot.predict_parts.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:34-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:38-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:45: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:46: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:47: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:48: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_parts.Rd:53: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_profile.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_profile.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_profile.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_profile.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_profile.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_profile.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_profile.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_profile.Rd:33-34: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.predict_profile.Rd:35: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’/Users/ripley/R/R-devel/bin/BATCH: line 60: 36417 Cputime limit exceeded: 24 ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1 [18s/11s] [18s/11s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(DALEX) Welcome to DALEX (version: 2.4.3). Find examples and detailed introduction at: http://ema.drwhy.ai/ Additional features will be available after installation of: ggpubr. Use 'install_dependencies()' to get all suggested dependencies > > test_check("DALEX") Package: ranger Package version: 0.16.0 Task type: regressionModel label: ranger Model class: ranger Data head : construction.year surface floor no.rooms district 1 1953 25 3 1 Srodmiescie 2 1992 143 9 5 Bielany m2.price construction.year surface floor Min. :1607 Min. :1920 Min. : 20.00 Min. : 1.000 1st Qu.:2857 1st Qu.:1943 1st Qu.: 53.00 1st Qu.: 3.000 Median :3386 Median :1965 Median : 85.50 Median : 6.000 Mean :3487 Mean :1965 Mean : 85.59 Mean : 5.623 3rd Qu.:4018 3rd Qu.:1988 3rd Qu.:118.00 3rd Qu.: 8.000 Max. :6595 Max. :2010 Max. :150.00 Max. :10.000 no.rooms district y y_hat Min. :1.00 Mokotow :107 Min. :1607 Min. :1833 1st Qu.:2.00 Wola :106 1st Qu.:2857 1st Qu.:2938 Median :3.00 Ursus :105 Median :3386 Median :3414 Mean :3.36 Ursynow :103 Mean :3487 Mean :3489 3rd Qu.:4.00 Srodmiescie:100 3rd Qu.:4018 3rd Qu.:3958 Max. :6.00 Bemowo : 98 Max. :6595 Max. :6165 (Other) :381 residuals abs_residuals label ids Min. :-421.864 Min. : 0.0418 Length:1000 Min. : 1.0 1st Qu.: -89.368 1st Qu.: 38.2248 Class :character 1st Qu.: 250.8 Median : -25.661 Median : 81.5020 Mode :character Median : 500.5 Mean : -1.645 Mean :106.0566 Mean : 500.5 3rd Qu.: 61.652 3rd Qu.:147.4788 3rd Qu.: 750.2 Max. : 558.831 Max. :558.8309 Max. :1000.0 surface construction.year y y_hat Min. : 20.00 Min. :1920 Min. :1607 Min. :1833 1st Qu.: 53.00 1st Qu.:1943 1st Qu.:2857 1st Qu.:2938 Median : 85.50 Median :1965 Median :3386 Median :3414 Mean : 85.59 Mean :1965 Mean :3487 Mean :3489 3rd Qu.:118.00 3rd Qu.:1988 3rd Qu.:4018 3rd Qu.:3958 Max. :150.00 Max. :2010 Max. :6595 Max. :6165 residuals abs_residuals label ids Min. :-421.864 Min. : 0.0418 Length:1000 Min. : 1.0 1st Qu.: -89.368 1st Qu.: 38.2248 Class :character 1st Qu.: 250.8 Median : -25.661 Median : 81.5020 Mode :character Median : 500.5 Mean : -1.645 Mean :106.0566 Mean : 500.5 3rd Qu.: 61.652 3rd Qu.:147.4788 3rd Qu.: 750.2 Max. : 558.831 Max. :558.8309 Max. :1000.0 m2.price construction.year surface floor Min. :1607 Min. :1920 Min. : 20.00 Min. : 1.000 1st Qu.:2857 1st Qu.:1943 1st Qu.: 53.00 1st Qu.: 3.000 Median :3386 Median :1965 Median : 85.50 Median : 6.000 Mean :3487 Mean :1965 Mean : 85.59 Mean : 5.623 3rd Qu.:4018 3rd Qu.:1988 3rd Qu.:118.00 3rd Qu.: 8.000 Max. :6595 Max. :2010 Max. :150.00 Max. :10.000 no.rooms district y y_hat Min. :1.00 Mokotow :107 Min. :1607 Min. :1833 1st Qu.:2.00 Wola :106 1st Qu.:2857 1st Qu.:2938 Median :3.00 Ursus :105 Median :3386 Median :3414 Mean :3.36 Ursynow :103 Mean :3487 Mean :3489 3rd Qu.:4.00 Srodmiescie:100 3rd Qu.:4018 3rd Qu.:3958 Max. :6.00 Bemowo : 98 Max. :6595 Max. :6165 (Other) :381 residuals abs_residuals label ids Min. :-421.864 Min. : 0.0418 Length:1000 Min. : 1.0 1st Qu.: -89.368 1st Qu.: 38.2248 Class :character 1st Qu.: 250.8 Median : -25.661 Median : 81.5020 Mode :character Median : 500.5 Mean : -1.645 Mean :106.0566 Mean : 500.5 3rd Qu.: 61.652 3rd Qu.:147.4788 3rd Qu.: 750.2 Max. : 558.831 Max. :558.8309 Max. :1000.0 The number of important variables for ranger's prediction is 4 out of 6. Variables district, surface, floor have the highest importantance. Preparation of a new explainer is initiated -> model label : ranger (  default  ) -> data : 7847 rows 6 cols -> target variable : 7847 values -> predict function : yhat.ranger will be used (  default  ) -> predicted values : No value for predict function target column. (  default  ) -> model_info : package ranger , ver. 0.16.0 , task multiclass (  default  ) -> predicted values : predict function returns multiple columns: 3 (  default  ) -> residual function : difference between 1 and probability of true class (  default  ) -> residuals : numerical, min = 0.0005747126 , mean = 0.2791502 , max = 0.9079082  A new explainer has been created!  Measures for: regression mse : 79358.95 rmse : 281.7072 r2 : 0.900389 mad : 211.999 Residuals: 0% 10% 20% 30% 40% 50% 60% 70% -249.1437 -223.8050 -208.7184 -195.0442 -184.4288 -175.5123 -161.8545 366.1237 80% 90% 100% 396.9122 424.0089 470.8357 Top profiles : _vname_ _label_ _x_ _yhat_ _ids_ 1 age ranger 0.1666667 0.5042177 0 2 age ranger 2.0000000 0.5714615 0 3 age ranger 4.0000000 0.5731204 0 4 age ranger 7.0000000 0.5462761 0 5 age ranger 9.0000000 0.5042403 0 6 age ranger 13.0000000 0.4760500 0 Top profiles : _vname_ _label_ _x_ _yhat_ _ids_ 1 age lm 20.00389 0.3996523 0 2 age lm 20.35994 0.3995537 0 3 age lm 20.70936 0.3994570 0 4 age lm 21.09156 0.3993512 0 5 age lm 21.41847 0.3992608 0 6 age lm 21.85549 0.3991401 0 Asymptotic two-sample Kolmogorov-Smirnov test data: residuals_other and residuals_sel D = 0.48632, p-value = 1.829e-10 alternative hypothesis: two-sided Top profiles : construction.year surface floor no.rooms district _yhat_ _vname_ _ids_ 1 1953 20 3 1 Srodmiescie 6112.597 surface 1 1.1 1953 22 3 1 Srodmiescie 6092.121 surface 1 1.2 1953 23 3 1 Srodmiescie 6081.883 surface 1 1.3 1953 24 3 1 Srodmiescie 6071.645 surface 1 1.4 1953 26 3 1 Srodmiescie 6051.170 surface 1 1.5 1953 27 3 1 Srodmiescie 6040.932 surface 1 _label_ 1 lm 1.1 lm 1.2 lm 1.3 lm 1.4 lm 1.5 lm Top observations: construction.year surface floor no.rooms district _yhat_ _label_ _ids_ 1 1953 25 3 1 Srodmiescie 6061.407 lm 1 * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/Users/ripley/R/packages/tests-devel/DALEX.Rcheck/00check.log’ for details. 40.67 real 34.33 user 9.05 sys