* using log directory ‘/Users/ripley/R/packages/tests-devel/BayesSurvive.Rcheck’
* using R Under development (unstable) (2025-12-24 r89227)
* using platform: aarch64-apple-darwin25.2.0
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.6.3.2)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.2
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘BayesSurvive/DESCRIPTION’ ... OK
* this is package ‘BayesSurvive’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BayesSurvive’ can be installed ... [26s/27s] OK
* used C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.3.2)’
* used C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.3.2)’
* used SDK: ‘MacOSX26.2.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [41s/41s]
 [41s/41s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(BayesSurvive)
  > 
  > test_check("BayesSurvive")
  Saving _problems/test-general-32.R
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 16 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-general.R:32:1'): (code run outside of `test_that()`) ──────────
  Error in ``[.data.table`(score, , `:=`(IPA, 1 - Brier/Brier[model == "Null model"]), by = times)`: Internal error in dogroups: Trying to add new column by reference but tl is full; setalloccol should have run first at R level before getting to this point. Please report to the data.table issues tracker.
  Backtrace:
      ▆
   1. ├─stats::predict(fit, survObj.new = dataset, times = 8.5, verbose = FALSE) at test-general.R:32:1
   2. └─BayesSurvive:::predict.BayesSurvive(...)
   3.   ├─riskRegression::Score(...)
   4.   └─riskRegression::Score.list(...)
   5.     └─riskRegression:::computePerformance(...)
   6.       └─riskRegression:::IPACompute(...)
   7.         ├─score[, `:=`(IPA, 1 - Brier/Brier[model == "Null model"]), by = times]
   8.         └─data.table:::`[.data.table`(...)
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 16 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/ripley/R/packages/tests-devel/BayesSurvive.Rcheck/00check.log’
for details.

      126.48 real       104.37 user        16.60 sys