* installing *source* package ‘AdmixPoly’ ...
** this is package ‘AdmixPoly’ version ‘1.0.0’
** package ‘AdmixPoly’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 21.0.0 (clang-2100.1.1.101)’
using SDK: ‘MacOSX26.5.sdk’
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppArmadillo/include' -isystem /opt/R/arm64/include    -DARMA_64BIT_WORD=1 -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c AdmixGlobal.cpp -o AdmixGlobal.o
In file included from AdmixGlobal.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:51:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:791:
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/op_logmat_meat.hpp:431:40: warning: implicit conversion from 'uword' (aka 'unsigned long long') to 'typename Col<double>::pod_type' (aka 'double') may lose precision [-Wimplicit-int-float-conversion]
  431 |   const vec indices = regspace<vec>(1,m-1);
      |                       ~~~~~~~~        ~^~
In file included from AdmixGlobal.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:79:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/functions.h:63:
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:38:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   38 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:44:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   44 |             s += t/n;
      |                   ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:68:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   68 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:69:15: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   69 |         si /= n;
      |            ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:77:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   77 |             s += t/n;
      |                   ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:78:22: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   78 |             si += ti/n;
      |                     ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:104:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  104 |         s /= n;                 // no overflow correction needed for logical vectors
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:122:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  122 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:128:16: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  128 |         s += t/n;
      |               ~^
In file included from AdmixGlobal.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:93:
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:399:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  399 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:407:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  407 |             s += t / n;
      |                    ~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:426:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  426 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:435:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  435 |             s += t / n;
      |                    ~ ^
In file included from AdmixGlobal.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:37:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloSugar.h:45:17: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
   45 |         j[ie] = cp;
      |               ~ ^~
In file included from AdmixGlobal.cpp:1:
./AdmixUtils.h:23:29: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
   23 |  if(nelem!=NULL) *nelem = v.length();
      |                         ~ ~~^~~~~~~~
./AdmixUtils.h:168:56: warning: implicit conversion from 'a_uint' (aka 'unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  168 |  return std::exp(logCoeff + x * std::log(prob) + (size - x) * std::log(1 - prob));
      |                                                   ~~~~~^~~  ~
./AdmixUtils.h:168:29: warning: implicit conversion from 'const a_uint' (aka 'const unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  168 |  return std::exp(logCoeff + x * std::log(prob) + (size - x) * std::log(1 - prob));
      |                             ^ ~
./AdmixUtils.h:178:10: warning: implicit conversion turns floating-point number into integer: 'typename Col<double>::elem_type' (aka 'double') to 'int' [-Wfloat-conversion]
  178 |  int n = arma::accu(x); //// QUESTION
      |      ~   ^~~~~~~~~~~~~
./AdmixUtils.h:183:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wfloat-conversion]
  183 |  return exp(coef);
      |  ~~~~~~ ^~~~~~~~~
./AdmixUtils.h:196:14: warning: implicit conversion from 'const unsigned long long' to 'double' may lose precision [-Wimplicit-int-float-conversion]
  196 |    logpdf += x[i] * std::log(p[i]) - std::lgamma(x[i] + 1);
      |              ^~~~ ~
./AdmixUtils.h:193:10: warning: implicit conversion loses integer precision: 'typename Row<unsigned long long>::elem_type' (aka 'unsigned long long') to 'int' [-Wshorten-64-to-32]
  193 |  int n = arma::accu(x);
      |      ~   ^~~~~~~~~~~~~
./AdmixUtils.h:296:46: warning: implicit conversion from 'const a_uint' (aka 'const unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  296 |   for(size_t i=0; i<K; i++) available_sum += available[i];
      |                                           ~~ ^~~~~~~~~~~~
./AdmixUtils.h:303:25: warning: implicit conversion from 'const a_uint' (aka 'const unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  303 |       double prob_new = available[k]*Prop[kk]/available_sum * StateProbInput.probability;
      |                         ^~~~~~~~~~~~~
./AdmixUtils.h:350:56: warning: implicit conversion from 'const unsigned long long' to 'double' may lose precision [-Wimplicit-int-float-conversion]
  350 |     res[statecoord_s] += stateprob_s.probability * it->second;
      |                                                  ~ ~~~~^~~~~~
./AdmixUtils.h:371:54: warning: implicit conversion from 'value_type' (aka 'unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  371 |    for(a_uint i = 0; i < k; i++) result.at(row, i) = indx[i];
      |                                                    ~ ^~~~~~~
./AdmixUtils.h:393:12: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  393 |  int N = x.size();
      |      ~   ~~^~~~~~
./AdmixUtils.h:394:10: warning: implicit conversion loses integer precision: 'a_uint' (aka 'unsigned long long') to 'int' [-Wshorten-64-to-32]
  394 |  int M = BinomialCoefficient(N,J);
      |      ~   ^~~~~~~~~~~~~~~~~~~~~~~~
./AdmixUtils.h:459:30: warning: implicit conversion from 'a_uint' (aka 'unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  459 |      } else if (Geno_m[l] != (a_uint)Geno_m[l]) { //// QUESTION
      |                           ~~ ^~~~~~~~~~~~~~~~~
AdmixGlobal.cpp:3:10: fatal error: 'omp.h' file not found
    3 | #include <omp.h>
      |          ^~~~~~~
29 warnings and 1 error generated.
make[1]: *** [AdmixGlobal.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppArmadillo/include' -isystem /opt/R/arm64/include    -DARMA_64BIT_WORD=1 -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c AdmixLocal.cpp -o AdmixLocal.o
In file included from AdmixLocal.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:51:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:791:
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/op_logmat_meat.hpp:431:40: warning: implicit conversion from 'uword' (aka 'unsigned long long') to 'typename Col<double>::pod_type' (aka 'double') may lose precision [-Wimplicit-int-float-conversion]
  431 |   const vec indices = regspace<vec>(1,m-1);
      |                       ~~~~~~~~        ~^~
In file included from AdmixLocal.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:79:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/functions.h:63:
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:38:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   38 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:44:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   44 |             s += t/n;
      |                   ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:68:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   68 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:69:15: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   69 |         si /= n;
      |            ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:77:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   77 |             s += t/n;
      |                   ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:78:22: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   78 |             si += ti/n;
      |                     ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:104:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  104 |         s /= n;                 // no overflow correction needed for logical vectors
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:122:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  122 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:128:16: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  128 |         s += t/n;
      |               ~^
In file included from AdmixLocal.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:93:
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:399:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  399 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:407:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  407 |             s += t / n;
      |                    ~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:426:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  426 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:435:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  435 |             s += t / n;
      |                    ~ ^
In file included from AdmixLocal.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:37:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloSugar.h:45:17: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
   45 |         j[ie] = cp;
      |               ~ ^~
In file included from AdmixLocal.cpp:1:
./AdmixUtils.h:23:29: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
   23 |  if(nelem!=NULL) *nelem = v.length();
      |                         ~ ~~^~~~~~~~
./AdmixUtils.h:168:56: warning: implicit conversion from 'a_uint' (aka 'unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  168 |  return std::exp(logCoeff + x * std::log(prob) + (size - x) * std::log(1 - prob));
      |                                                   ~~~~~^~~  ~
./AdmixUtils.h:168:29: warning: implicit conversion from 'const a_uint' (aka 'const unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  168 |  return std::exp(logCoeff + x * std::log(prob) + (size - x) * std::log(1 - prob));
      |                             ^ ~
./AdmixUtils.h:178:10: warning: implicit conversion turns floating-point number into integer: 'typename Col<double>::elem_type' (aka 'double') to 'int' [-Wfloat-conversion]
  178 |  int n = arma::accu(x); //// QUESTION
      |      ~   ^~~~~~~~~~~~~
./AdmixUtils.h:183:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wfloat-conversion]
  183 |  return exp(coef);
      |  ~~~~~~ ^~~~~~~~~
./AdmixUtils.h:196:14: warning: implicit conversion from 'const unsigned long long' to 'double' may lose precision [-Wimplicit-int-float-conversion]
  196 |    logpdf += x[i] * std::log(p[i]) - std::lgamma(x[i] + 1);
      |              ^~~~ ~
./AdmixUtils.h:193:10: warning: implicit conversion loses integer precision: 'typename Row<unsigned long long>::elem_type' (aka 'unsigned long long') to 'int' [-Wshorten-64-to-32]
  193 |  int n = arma::accu(x);
      |      ~   ^~~~~~~~~~~~~
./AdmixUtils.h:296:46: warning: implicit conversion from 'const a_uint' (aka 'const unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  296 |   for(size_t i=0; i<K; i++) available_sum += available[i];
      |                                           ~~ ^~~~~~~~~~~~
./AdmixUtils.h:303:25: warning: implicit conversion from 'const a_uint' (aka 'const unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  303 |       double prob_new = available[k]*Prop[kk]/available_sum * StateProbInput.probability;
      |                         ^~~~~~~~~~~~~
./AdmixUtils.h:350:56: warning: implicit conversion from 'const unsigned long long' to 'double' may lose precision [-Wimplicit-int-float-conversion]
  350 |     res[statecoord_s] += stateprob_s.probability * it->second;
      |                                                  ~ ~~~~^~~~~~
./AdmixUtils.h:371:54: warning: implicit conversion from 'value_type' (aka 'unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  371 |    for(a_uint i = 0; i < k; i++) result.at(row, i) = indx[i];
      |                                                    ~ ^~~~~~~
./AdmixUtils.h:393:12: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  393 |  int N = x.size();
      |      ~   ~~^~~~~~
./AdmixUtils.h:394:10: warning: implicit conversion loses integer precision: 'a_uint' (aka 'unsigned long long') to 'int' [-Wshorten-64-to-32]
  394 |  int M = BinomialCoefficient(N,J);
      |      ~   ^~~~~~~~~~~~~~~~~~~~~~~~
./AdmixUtils.h:459:30: warning: implicit conversion from 'a_uint' (aka 'unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  459 |      } else if (Geno_m[l] != (a_uint)Geno_m[l]) { //// QUESTION
      |                           ~~ ^~~~~~~~~~~~~~~~~
AdmixLocal.cpp:2:10: fatal error: 'omp.h' file not found
    2 | #include <omp.h>
      |          ^~~~~~~
29 warnings and 1 error generated.
make[1]: *** [AdmixLocal.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppArmadillo/include' -isystem /opt/R/arm64/include    -DARMA_64BIT_WORD=1 -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:51:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:791:
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/op_logmat_meat.hpp:431:40: warning: implicit conversion from 'uword' (aka 'unsigned long long') to 'typename Col<double>::pod_type' (aka 'double') may lose precision [-Wimplicit-int-float-conversion]
  431 |   const vec indices = regspace<vec>(1,m-1);
      |                       ~~~~~~~~        ~^~
In file included from RcppExports.cpp:4:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:79:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/functions.h:63:
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:38:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   38 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:44:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   44 |             s += t/n;
      |                   ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:68:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   68 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:69:15: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   69 |         si /= n;
      |            ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:77:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   77 |             s += t/n;
      |                   ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:78:22: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   78 |             si += ti/n;
      |                     ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:104:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  104 |         s /= n;                 // no overflow correction needed for logical vectors
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:122:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  122 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:128:16: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  128 |         s += t/n;
      |               ~^
In file included from RcppExports.cpp:4:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:93:
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:399:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  399 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:407:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  407 |             s += t / n;
      |                    ~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:426:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  426 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:435:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  435 |             s += t / n;
      |                    ~ ^
In file included from RcppExports.cpp:4:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:37:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloSugar.h:45:17: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
   45 |         j[ie] = cp;
      |               ~ ^~
In file included from RcppExports.cpp:4:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:51:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:518:
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/fn_misc.hpp:68:31: warning: implicit conversion from 'uword' (aka 'unsigned long long') to 'T' (aka 'double') may lose precision [-Wimplicit-int-float-conversion]
   68 |         x_mem[i] = eT(start + i*delta);
      |                               ^~
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/fn_misc.hpp:109:10: note: in instantiation of function template specialization 'arma::linspace<arma::Col<double>>' requested here
  109 |   return linspace<vec>(start, end, num);
      |          ^
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/fn_misc.hpp:80:38: warning: implicit conversion from 'uword' (aka 'unsigned long long') to 'float' may lose precision [-Wimplicit-int-float-conversion]
   80 |         x_mem[i] = eT(float(start) + i*delta);
      |                                      ^~
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/fn_misc.hpp:91:39: warning: implicit conversion from 'uword' (aka 'unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
   91 |         x_mem[i] = eT(double(start) + i*delta);
      |                                       ^~
In file included from RcppExports.cpp:4:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:51:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:520:
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/fn_regspace.hpp:90:59: warning: implicit conversion from 'uword' (aka 'unsigned long long') to 'T' (aka 'double') may lose precision [-Wimplicit-int-float-conversion]
   90 |     for(uword i=0; i < N; ++i) { x_mem[i] = eT( start + T(i*inc) ); }
      |                                                           ^~
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/fn_regspace.hpp:163:5: note: in instantiation of function template specialization 'arma::internal_regspace_var_delta<double, double>' requested here
  163 |     internal_regspace_var_delta(x, start, delta, end);
      |     ^
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/fn_regspace.hpp:248:10: note: in instantiation of function template specialization 'arma::regspace<arma::Col<double>, double>' requested here
  248 |   return regspace<vec>(start, delta, end);
      |          ^
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/fn_regspace.hpp:94:59: warning: implicit conversion from 'uword' (aka 'unsigned long long') to 'T' (aka 'double') may lose precision [-Wimplicit-int-float-conversion]
   94 |     for(uword i=0; i < N; ++i) { x_mem[i] = eT( start - T(i*inc) ); }
      |                                                           ^~
In file included from RcppExports.cpp:4:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:51:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:518:
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/fn_misc.hpp:80:38: warning: implicit conversion from 'uword' (aka 'unsigned long long') to 'float' may lose precision [-Wimplicit-int-float-conversion]
   80 |         x_mem[i] = eT(float(start) + i*delta);
      |                                      ^~
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/SpMat_meat.hpp:4487:18: note: in instantiation of function template specialization 'arma::linspace<arma::Col<unsigned long long>>' requested here
 4487 |   uvec indices = linspace<uvec>( 0u, in_rows*in_cols-1, new_n_nonzero );
      |                  ^
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/fn_sprandn.hpp:83:7: note: in instantiation of member function 'arma::SpMat<double>::sprandn' requested here
   83 |   out.sprandn(n_rows, n_cols, density);
      |       ^
In file included from RcppExports.cpp:4:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:51:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:518:
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/fn_misc.hpp:91:39: warning: implicit conversion from 'uword' (aka 'unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
   91 |         x_mem[i] = eT(double(start) + i*delta);
      |                                       ^~
In file included from RcppExports.cpp:4:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:35:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloWrap.h:140:44: warning: implicit conversion loses integer precision: 'const uword' (aka 'const unsigned long long') to 'int' [-Wshorten-64-to-32]
  140 |             inline int size() const { return data.n_elem ; }
      |                                       ~~~~~~ ~~~~~^~~~~~
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:710:31: note: in instantiation of member function 'Rcpp::RcppArmadillo::FieldImporter<arma::SpMat<double>>::size' requested here
  710 |             int size = object.size();
      |                               ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:720:20: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_importer__impl<Rcpp::RcppArmadillo::FieldImporter<arma::SpMat<double>>, arma::SpMat<double>>' requested here
  720 |             return wrap_dispatch_importer__impl<T,elem_type>(object,
      |                    ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:796:20: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_importer<Rcpp::RcppArmadillo::FieldImporter<arma::SpMat<double>>, arma::SpMat<double>>' requested here
  796 |             return wrap_dispatch_importer<T,typename T::r_import_type>(object);
      |                    ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:807:20: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch_unknown_importable<Rcpp::RcppArmadillo::FieldImporter<arma::SpMat<double>>>' requested here
  807 |             return wrap_dispatch_unknown_importable(object, typename ::Rcpp::traits::is_importer<T>::type());
      |                    ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap_end.h:30:25: note: in instantiation of function template specialization 'Rcpp::internal::wrap_dispatch<Rcpp::RcppArmadillo::FieldImporter<arma::SpMat<double>>>' requested here
   30 |           return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits<T>::wrap_category() ) ;
      |                            ^
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloWrap.h:151:21: note: in instantiation of function template specialization 'Rcpp::wrap<Rcpp::RcppArmadillo::FieldImporter<arma::SpMat<double>>>' requested here
  151 |         RObject x = wrap( RcppArmadillo::FieldImporter<T>( data ) ) ;
      |                     ^
RcppExports.cpp:191:29: note: in instantiation of function template specialization 'Rcpp::wrap<arma::SpMat<double>>' requested here
  191 |     rcpp_result_gen = Rcpp::wrap(TransProbComponents(Prop, P, MaxRec, NbThreads));
      |                             ^
23 warnings generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppArmadillo/include' -isystem /opt/R/arm64/include    -DARMA_64BIT_WORD=1 -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c ReadFile.cpp -o ReadFile.o
In file included from ReadFile.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:51:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:791:
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/op_logmat_meat.hpp:431:40: warning: implicit conversion from 'uword' (aka 'unsigned long long') to 'typename Col<double>::pod_type' (aka 'double') may lose precision [-Wimplicit-int-float-conversion]
  431 |   const vec indices = regspace<vec>(1,m-1);
      |                       ~~~~~~~~        ~^~
In file included from ReadFile.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:79:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/functions.h:63:
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:38:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   38 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:44:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   44 |             s += t/n;
      |                   ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:68:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   68 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:69:15: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   69 |         si /= n;
      |            ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:77:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   77 |             s += t/n;
      |                   ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:78:22: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   78 |             si += ti/n;
      |                     ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:104:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  104 |         s /= n;                 // no overflow correction needed for logical vectors
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:122:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  122 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:128:16: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  128 |         s += t/n;
      |               ~^
In file included from ReadFile.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:93:
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:399:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  399 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:407:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  407 |             s += t / n;
      |                    ~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:426:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  426 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:435:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  435 |             s += t / n;
      |                    ~ ^
In file included from ReadFile.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:37:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloSugar.h:45:17: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
   45 |         j[ie] = cp;
      |               ~ ^~
In file included from ReadFile.cpp:1:
./AdmixUtils.h:23:29: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
   23 |  if(nelem!=NULL) *nelem = v.length();
      |                         ~ ~~^~~~~~~~
./AdmixUtils.h:168:56: warning: implicit conversion from 'a_uint' (aka 'unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  168 |  return std::exp(logCoeff + x * std::log(prob) + (size - x) * std::log(1 - prob));
      |                                                   ~~~~~^~~  ~
./AdmixUtils.h:168:29: warning: implicit conversion from 'const a_uint' (aka 'const unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  168 |  return std::exp(logCoeff + x * std::log(prob) + (size - x) * std::log(1 - prob));
      |                             ^ ~
./AdmixUtils.h:178:10: warning: implicit conversion turns floating-point number into integer: 'typename Col<double>::elem_type' (aka 'double') to 'int' [-Wfloat-conversion]
  178 |  int n = arma::accu(x); //// QUESTION
      |      ~   ^~~~~~~~~~~~~
./AdmixUtils.h:183:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wfloat-conversion]
  183 |  return exp(coef);
      |  ~~~~~~ ^~~~~~~~~
./AdmixUtils.h:196:14: warning: implicit conversion from 'const unsigned long long' to 'double' may lose precision [-Wimplicit-int-float-conversion]
  196 |    logpdf += x[i] * std::log(p[i]) - std::lgamma(x[i] + 1);
      |              ^~~~ ~
./AdmixUtils.h:193:10: warning: implicit conversion loses integer precision: 'typename Row<unsigned long long>::elem_type' (aka 'unsigned long long') to 'int' [-Wshorten-64-to-32]
  193 |  int n = arma::accu(x);
      |      ~   ^~~~~~~~~~~~~
./AdmixUtils.h:296:46: warning: implicit conversion from 'const a_uint' (aka 'const unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  296 |   for(size_t i=0; i<K; i++) available_sum += available[i];
      |                                           ~~ ^~~~~~~~~~~~
./AdmixUtils.h:303:25: warning: implicit conversion from 'const a_uint' (aka 'const unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  303 |       double prob_new = available[k]*Prop[kk]/available_sum * StateProbInput.probability;
      |                         ^~~~~~~~~~~~~
./AdmixUtils.h:350:56: warning: implicit conversion from 'const unsigned long long' to 'double' may lose precision [-Wimplicit-int-float-conversion]
  350 |     res[statecoord_s] += stateprob_s.probability * it->second;
      |                                                  ~ ~~~~^~~~~~
./AdmixUtils.h:371:54: warning: implicit conversion from 'value_type' (aka 'unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  371 |    for(a_uint i = 0; i < k; i++) result.at(row, i) = indx[i];
      |                                                    ~ ^~~~~~~
./AdmixUtils.h:393:12: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  393 |  int N = x.size();
      |      ~   ~~^~~~~~
./AdmixUtils.h:394:10: warning: implicit conversion loses integer precision: 'a_uint' (aka 'unsigned long long') to 'int' [-Wshorten-64-to-32]
  394 |  int M = BinomialCoefficient(N,J);
      |      ~   ^~~~~~~~~~~~~~~~~~~~~~~~
./AdmixUtils.h:459:30: warning: implicit conversion from 'a_uint' (aka 'unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  459 |      } else if (Geno_m[l] != (a_uint)Geno_m[l]) { //// QUESTION
      |                           ~~ ^~~~~~~~~~~~~~~~~
ReadFile.cpp:2:10: fatal error: 'omp.h' file not found
    2 | #include <omp.h>
      |          ^~~~~~~
29 warnings and 1 error generated.
make[1]: *** [ReadFile.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppArmadillo/include' -isystem /opt/R/arm64/include    -DARMA_64BIT_WORD=1 -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c SimulatePop.cpp -o SimulatePop.o
In file included from SimulatePop.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:51:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/armadillo:791:
/Users/ripley/R/Library/RcppArmadillo/include/armadillo_bits/op_logmat_meat.hpp:431:40: warning: implicit conversion from 'uword' (aka 'unsigned long long') to 'typename Col<double>::pod_type' (aka 'double') may lose precision [-Wimplicit-int-float-conversion]
  431 |   const vec indices = regspace<vec>(1,m-1);
      |                       ~~~~~~~~        ~^~
In file included from SimulatePop.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:79:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/functions.h:63:
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:38:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   38 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:44:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   44 |             s += t/n;
      |                   ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:68:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   68 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:69:15: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   69 |         si /= n;
      |            ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:77:20: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   77 |             s += t/n;
      |                   ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:78:22: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
   78 |             si += ti/n;
      |                     ~^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:104:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  104 |         s /= n;                 // no overflow correction needed for logical vectors
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:122:14: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  122 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/mean.h:128:16: warning: implicit conversion from 'R_xlen_t' (aka 'long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  128 |         s += t/n;
      |               ~^
In file included from SimulatePop.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:93:
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:399:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  399 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:407:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  407 |             s += t / n;
      |                    ~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:426:14: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  426 |         s /= n;
      |           ~~ ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/algorithm.h:435:22: warning: implicit conversion from 'std::size_t' (aka 'unsigned long') to 'long double' may lose precision [-Wimplicit-int-float-conversion]
  435 |             s += t / n;
      |                    ~ ^
In file included from SimulatePop.cpp:1:
In file included from ./AdmixUtils.h:7:
In file included from ./AdmixPoly_types.h:1:
In file included from /Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo.h:37:
/Users/ripley/R/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloSugar.h:45:17: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
   45 |         j[ie] = cp;
      |               ~ ^~
In file included from SimulatePop.cpp:1:
./AdmixUtils.h:23:29: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
   23 |  if(nelem!=NULL) *nelem = v.length();
      |                         ~ ~~^~~~~~~~
./AdmixUtils.h:168:56: warning: implicit conversion from 'a_uint' (aka 'unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  168 |  return std::exp(logCoeff + x * std::log(prob) + (size - x) * std::log(1 - prob));
      |                                                   ~~~~~^~~  ~
./AdmixUtils.h:168:29: warning: implicit conversion from 'const a_uint' (aka 'const unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  168 |  return std::exp(logCoeff + x * std::log(prob) + (size - x) * std::log(1 - prob));
      |                             ^ ~
./AdmixUtils.h:178:10: warning: implicit conversion turns floating-point number into integer: 'typename Col<double>::elem_type' (aka 'double') to 'int' [-Wfloat-conversion]
  178 |  int n = arma::accu(x); //// QUESTION
      |      ~   ^~~~~~~~~~~~~
./AdmixUtils.h:183:9: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wfloat-conversion]
  183 |  return exp(coef);
      |  ~~~~~~ ^~~~~~~~~
./AdmixUtils.h:196:14: warning: implicit conversion from 'const unsigned long long' to 'double' may lose precision [-Wimplicit-int-float-conversion]
  196 |    logpdf += x[i] * std::log(p[i]) - std::lgamma(x[i] + 1);
      |              ^~~~ ~
./AdmixUtils.h:193:10: warning: implicit conversion loses integer precision: 'typename Row<unsigned long long>::elem_type' (aka 'unsigned long long') to 'int' [-Wshorten-64-to-32]
  193 |  int n = arma::accu(x);
      |      ~   ^~~~~~~~~~~~~
./AdmixUtils.h:296:46: warning: implicit conversion from 'const a_uint' (aka 'const unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  296 |   for(size_t i=0; i<K; i++) available_sum += available[i];
      |                                           ~~ ^~~~~~~~~~~~
./AdmixUtils.h:303:25: warning: implicit conversion from 'const a_uint' (aka 'const unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  303 |       double prob_new = available[k]*Prop[kk]/available_sum * StateProbInput.probability;
      |                         ^~~~~~~~~~~~~
./AdmixUtils.h:350:56: warning: implicit conversion from 'const unsigned long long' to 'double' may lose precision [-Wimplicit-int-float-conversion]
  350 |     res[statecoord_s] += stateprob_s.probability * it->second;
      |                                                  ~ ~~~~^~~~~~
./AdmixUtils.h:371:54: warning: implicit conversion from 'value_type' (aka 'unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  371 |    for(a_uint i = 0; i < k; i++) result.at(row, i) = indx[i];
      |                                                    ~ ^~~~~~~
./AdmixUtils.h:393:12: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  393 |  int N = x.size();
      |      ~   ~~^~~~~~
./AdmixUtils.h:394:10: warning: implicit conversion loses integer precision: 'a_uint' (aka 'unsigned long long') to 'int' [-Wshorten-64-to-32]
  394 |  int M = BinomialCoefficient(N,J);
      |      ~   ^~~~~~~~~~~~~~~~~~~~~~~~
./AdmixUtils.h:459:30: warning: implicit conversion from 'a_uint' (aka 'unsigned long long') to 'double' may lose precision [-Wimplicit-int-float-conversion]
  459 |      } else if (Geno_m[l] != (a_uint)Geno_m[l]) { //// QUESTION
      |                           ~~ ^~~~~~~~~~~~~~~~~
SimulatePop.cpp:3:10: fatal error: 'omp.h' file not found
    3 | #include <omp.h>
      |          ^~~~~~~
29 warnings and 1 error generated.
make[1]: *** [SimulatePop.o] Error 1
make[1]: Target `all' not remade because of errors.
ERROR: compilation failed for package ‘AdmixPoly’
* removing ‘/Users/ripley/R/packages/tests-devel/AdmixPoly.Rcheck/AdmixPoly’