* installing *source* package ‘rgam’ ... ** package ‘rgam’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-LTO/rgam/src' /usr/local/gcc9/bin/g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO9/include" -DNDEBUG -I"/data/gannet/ripley/R/test-3.7/Rcpp/include" -I"/data/gannet/ripley/R/test-3.7/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c loess.cpp -o loess.o /usr/local/gcc9/bin/gcc -I"/data/gannet/ripley/R/LTO9/include" -DNDEBUG -I"/data/gannet/ripley/R/test-3.7/Rcpp/include" -I"/data/gannet/ripley/R/test-3.7/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c loessc.c -o loessc.o /usr/local/gcc9/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -pedantic -flto -c loessf.f -o loessf.o loessf.f:59:14: 59 | j=DBLE(j)/2.D0 | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] loessf.f:1895:14: 1895 | m=DBLE(l+u)/2.D0 | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] loessf.f:1397:20: 1397 | i=phi(pi(ii)) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] loessf.f:926:12: 926 | lg=DBLE(lg)/2.D0 | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] loessf.f:521:22: 521 | if(deg.eq.2) dk=dble((d+2)*(d+1))/2.d0 | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] loessf.f:1203:13: 1203 | ifloor=x | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] loessf.f:833:22: 833 | if(deg.eq.2) dk=dble((d+2)*(d+1))/2.d0 | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] loessf.f:1581:18: 1581 | i1=dble((d+2)*(d+1))/2.d0 | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] loessf.f:471:25: 471 | subroutine ehg133(n,d,vc,nvmax,nc,ncmax,a,c,hi,lo,v,vval,xi,m,z,s) | 1 Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument] loessf.f:471:39: 471 | subroutine ehg133(n,d,vc,nvmax,nc,ncmax,a,c,hi,lo,v,vval,xi,m,z,s) | 1 Warning: Unused dummy argument 'nc' at (1) [-Wunused-dummy-argument] loessf.f:826:31: 826 | subroutine ehg197(deg,tau,d,f,dk,trl) | 1 Warning: Unused dummy argument 'tau' at (1) [-Wunused-dummy-argument] loessf.f:1986:31: 1986 | subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) | 1 Warning: Unused dummy argument 'kappa' at (1) [-Wunused-dummy-argument] loessf.f:1986:47: 1986 | subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) | 1 Warning: Unused dummy argument 'nv' at (1) [-Wunused-dummy-argument] loessf.f:1986:53: 1986 | subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) | 1 Warning: Unused dummy argument 'nvmax' at (1) [-Wunused-dummy-argument] loessf.f:1855:22: 1855 | logical i1,i2,i3,leaf | 1 Warning: Unused variable 'i3' declared at (1) [-Wunused-variable] loessf.f:1496:50: 1496 | subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv) | 1 Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] loessf.f:1496:53: 1496 | subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv) | 1 Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] loessf.f:1647:30: 1647 | subroutine lowese(iv,liv,lv,wv,m,z,s) | 1 Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] loessf.f:1647:33: 1647 | subroutine lowese(iv,liv,lv,wv,m,z,s) | 1 Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] loessf.f:1666:39: 1666 | subroutine lowesf(xx,yy,ww,iv,liv,lv,wv,m,z,l,ihat,s) | 1 Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] loessf.f:1666:42: 1666 | subroutine lowesf(xx,yy,ww,iv,liv,lv,wv,m,z,l,ihat,s) | 1 Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] loessf.f:1698:30: 1698 | subroutine lowesl(iv,liv,lv,wv,m,z,l) | 1 Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] loessf.f:1698:33: 1698 | subroutine lowesl(iv,liv,lv,wv,m,z,l) | 1 Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] loessf.f:1720:33: 1720 | subroutine lowesr(yy,iv,liv,lv,wv) | 1 Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] loessf.f:1720:36: 1720 | subroutine lowesr(yy,iv,liv,lv,wv) | 1 Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] /usr/local/gcc9/bin/g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO9/include" -DNDEBUG -I"/data/gannet/ripley/R/test-3.7/Rcpp/include" -I"/data/gannet/ripley/R/test-3.7/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c rgam-main.cpp -o rgam-main.o /usr/local/gcc9/bin/g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO9/include" -DNDEBUG -I"/data/gannet/ripley/R/test-3.7/Rcpp/include" -I"/data/gannet/ripley/R/test-3.7/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c rgam.cpp -o rgam.o /usr/local/gcc9/bin/g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO9/include" -DNDEBUG -I"/data/gannet/ripley/R/test-3.7/Rcpp/include" -I"/data/gannet/ripley/R/test-3.7/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c rgam_binomial.cpp -o rgam_binomial.o /usr/local/gcc9/bin/g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO9/include" -DNDEBUG -I"/data/gannet/ripley/R/test-3.7/Rcpp/include" -I"/data/gannet/ripley/R/test-3.7/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c rgam_poisson.cpp -o rgam_poisson.o /usr/local/gcc9/bin/g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO9/include" -DNDEBUG -I"/data/gannet/ripley/R/test-3.7/Rcpp/include" -I"/data/gannet/ripley/R/test-3.7/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c utils.cpp -o utils.o /usr/local/gcc9/bin/g++ -std=gnu++11 -shared -L/usr/local/gcc9/lib64 -L/usr/local/lib64 -o rgam.so loess.o loessc.o loessf.o rgam-main.o rgam.o rgam_binomial.o rgam_poisson.o utils.o -lgfortran -lm -lquadmath loessc.c:50:6: warning: type of 'lowesb_' does not match original declaration [-Wlto-type-mismatch] 50 | void F77_NAME(lowesb)(double*, double*, double*, double*, int*, int*, int*, | ^ loessf.f:1496:16: note: 'lowesb' was previously declared here 1496 | subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv) | ^ loessf.f:1496:16: note: code may be misoptimized unless '-fno-strict-aliasing' is used loessc.c:53:6: warning: type of 'lowesd_' does not match original declaration [-Wlto-type-mismatch] 53 | void F77_NAME(lowesd)(int*, int*, int*, int*, double*, int*, int*, | ^ loessf.f:1545:16: note: 'lowesd' was previously declared here 1545 | subroutine lowesd(versio,iv,liv,lv,v,d,n,f,ideg,nvmax,setlf) | ^ loessf.f:1545:16: note: code may be misoptimized unless '-fno-strict-aliasing' is used loessf.f:2048:16: warning: type of 'ehg184a' does not match original declaration [-Wlto-type-mismatch] 2048 | call ehg184a(s, len(s), x, n, inc) | ^ loessc.c:403:6: note: type mismatch in parameter 6 403 | void F77_SUB(ehg184a)(char *s, int *nc, double *x, int *n, int *inc) | ^ loessc.c:403:6: note: type 'void' should match type 'long int' loessc.c:403:6: note: 'ehg184a_' was previously declared here loessf.f:2041:16: warning: type of 'ehg183a' does not match original declaration [-Wlto-type-mismatch] 2041 | call ehg183a(s, len(s), i, n, inc) | ^ loessc.c:389:6: note: type mismatch in parameter 6 389 | void F77_SUB(ehg183a)(char *s, int *nc,int *i,int *n,int *inc) | ^ loessc.c:389:6: note: type 'void' should match type 'long int' loessc.c:389:6: note: 'ehg183a_' was previously declared here make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-LTO/rgam/src' installing to /data/gannet/ripley/R/packages/tests-LTO/Libs/rgam-lib/00LOCK-rgam/00new/rgam/libs ** R ** data *** moving datasets to lazyload DB ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rgam) Time 2:16.15, 107.82 + 7.08