* installing *source* package ‘rbridge’ ...
** this is package ‘rbridge’ version ‘1.0.3’
** package ‘rbridge’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
make[2]: Entering directory '/data/localhost/ripley/R/packages/tests-LTO/rbridge/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c Main_functions.cpp -o Main_functions.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o rbridge.so Main_functions.o RcppExports.o -fopenmp -llapack -L/data/localhost/ripley/R/R-devel/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath
/data/localhost/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:299:8: warning: type ‘struct state_type’ violates the C++ One Definition Rule [-Wodr]
  299 | struct state_type
      |        ^
/data/localhost/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:299:8: note: a different type is defined in another translation unit
  299 | struct state_type
      |        ^
/data/localhost/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:304:22: note: the first difference of corresponding definitions is field ‘state’
  304 |     std::atomic<int> state;
      |                      ^
/data/localhost/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:302:22: note: a field of same name but different type is defined in another translation unit
  302 |                 int  state;
      |                      ^
/usr/include/c++/16/atomic:864:12: note: type ‘struct atomic’ should match type ‘int’
  864 |     struct atomic<int> : __atomic_base<int>
      |            ^
/data/localhost/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/SpMat_bones.hpp:25:7: warning: type ‘struct SpMat’ violates the C++ One Definition Rule [-Wodr]
   25 | class SpMat : public SpBase< eT, SpMat<eT> >
      |       ^
/data/localhost/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/SpMat_bones.hpp:25:7: note: a different type is defined in another translation unit
   25 | class SpMat : public SpBase< eT, SpMat<eT> >
      |       ^
/data/localhost/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/SpMat_bones.hpp:691:35: note: the first difference of corresponding definitions is field ‘sync_state’
  691 |   arma_aligned mutable state_type sync_state;
      |                                   ^
/data/localhost/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/SpMat_bones.hpp:691:35: note: a field of same name but different type is defined in another translation unit
  691 |   arma_aligned mutable state_type sync_state;
      |                                   ^
/data/localhost/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/arma_forward.hpp:299:8: note: type ‘struct state_type’ itself violates the C++ One Definition Rule
  299 | struct state_type
      |        ^
RcppExports.cpp:64:14: warning: ‘Bridge’ violates the C++ One Definition Rule [-Wodr]
   64 | arma::sp_mat Bridge(const arma::mat& x, const arma::colvec& y, const double& q, const arma::colvec& lambda, const double& converge, const double& eta);
      |              ^
Main_functions.cpp:126:14: note: return value type mismatch
  126 | arma::sp_mat Bridge(const arma::mat & x,
      |              ^
Main_functions.cpp:126:14: note: type ‘struct sp_mat’ itself violates the C++ One Definition Rule
Main_functions.cpp:126:14: note: ‘Bridge’ was previously declared here
make[2]: Leaving directory '/data/localhost/ripley/R/packages/tests-LTO/rbridge/src'
installing to /data/localhost/ripley/R/packages/tests-LTO/Libs/rbridge-lib/00LOCK-rbridge/00new/rbridge/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rbridge)
Time 0:36.82, 24.78 + 1.82