* installing *source* package ‘randomForestRHF’ ... ** this is package ‘randomForestRHF’ version ‘1.0.0’ ** package ‘randomForestRHF’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-LTO/randomForestRHF/src' gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c R_init_randomForestRHF.c -o R_init_randomForestRHF.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c entry.c -o entry.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c medianLogStitchedHazard.c -o medianLogStitchedHazard.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c weightedStitchedHazard.c -o weightedStitchedHazard.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c augmentationOps.c -o augmentationOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c augmentationOpsCommon.c -o augmentationOpsCommon.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c augmentationOpsSimple.c -o augmentationOpsSimple.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c descriptor.c -o descriptor.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c entryGeneric.c -o entryGeneric.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c greedyOps.c -o greedyOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c internal.c -o internal.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c nodeOps.c -o nodeOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c nrutilDerived.c -o nrutilDerived.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c processEnsemble.c -o processEnsemble.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c rhfMain.c -o rhfMain.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c rhfMainRT.c -o rhfMainRT.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c server.c -o server.o server.c: In function ‘server’: server.c:35:11: warning: variable ‘k’ set but not used [-Wunused-but-set-variable] 35 | uint i, k; | ^ gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c sexpOutgoing.c -o sexpOutgoing.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c splitGreedy.c -o splitGreedy.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c splitInfoDerived.c -o splitInfoDerived.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c splitTDC.c -o splitTDC.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c splitNLS.c -o splitNLS.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c splitUtil.c -o splitUtil.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c stackOutput.c -o stackOutput.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c stackOutputQQ.c -o stackOutputQQ.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c stackOutputQQTest.c -o stackOutputQQTest.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c stackSubjectInfo.c -o stackSubjectInfo.o stackSubjectInfo.c: In function ‘stackSubjectArraysOnly’: stackSubjectInfo.c:29:11: warning: unused variable ‘j’ [-Wunused-variable] 29 | uint i, j; | ^ gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c survivalTDC.c -o survivalTDC.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c termOps.c -o termOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c treeOps.c -o treeOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c treeOpsRT.c -o treeOpsRT.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/bootstrap.c -o shared/bootstrap.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/classification.c -o shared/classification.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/diagnostic.c -o shared/diagnostic.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/error.c -o shared/error.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/factorOps.c -o shared/factorOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/internalCore.c -o shared/internalCore.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/leafLink.c -o shared/leafLink.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/nativeUtil.c -o shared/nativeUtil.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/nodeBaseOps.c -o shared/nodeBaseOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/nrutil.c -o shared/nrutil.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/stackParallel.c -o shared/stackParallel.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/polarityNew.c -o shared/polarityNew.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/preprocessForestRecord.c -o shared/preprocessForestRecord.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/quantile.c -o shared/quantile.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/random.c -o shared/random.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/regression.c -o shared/regression.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/restoreTree.c -o shared/restoreTree.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/sampling.c -o shared/sampling.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/sexpIO.c -o shared/sexpIO.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/sortedLink.c -o shared/sortedLink.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/splitInfo.c -o shared/splitInfo.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/stack.c -o shared/stack.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/stackAuxiliaryInfo.c -o shared/stackAuxiliaryInfo.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/stackForestObjects.c -o shared/stackForestObjects.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/stackIncoming.c -o shared/stackIncoming.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/stackMembershipVectors.c -o shared/stackMembershipVectors.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/stackPreDefined.c -o shared/stackPreDefined.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/survival.c -o shared/survival.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/termBaseOps.c -o shared/termBaseOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c shared/trace.c -o shared/trace.o gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -fpic -L/usr/local/lib64 -o randomForestRHF.so R_init_randomForestRHF.o entry.o medianLogStitchedHazard.o weightedStitchedHazard.o augmentationOps.o augmentationOpsCommon.o augmentationOpsSimple.o descriptor.o entryGeneric.o greedyOps.o internal.o nodeOps.o nrutilDerived.o processEnsemble.o rhfMain.o rhfMainRT.o server.o sexpOutgoing.o splitGreedy.o splitInfoDerived.o splitTDC.o splitNLS.o splitUtil.o stackOutput.o stackOutputQQ.o stackOutputQQTest.o stackSubjectInfo.o survivalTDC.o termOps.o treeOps.o treeOpsRT.o shared/bootstrap.o shared/classification.o shared/diagnostic.o shared/error.o shared/factorOps.o shared/internalCore.o shared/leafLink.o shared/nativeUtil.o shared/nodeBaseOps.o shared/nrutil.o shared/stackParallel.o shared/polarityNew.o shared/preprocessForestRecord.o shared/quantile.o shared/random.o shared/regression.o shared/restoreTree.o shared/sampling.o shared/sexpIO.o shared/sortedLink.o shared/splitInfo.o shared/stack.o shared/stackAuxiliaryInfo.o shared/stackForestObjects.o shared/stackIncoming.o shared/stackMembershipVectors.o shared/stackPreDefined.o shared/survival.o shared/termBaseOps.o shared/trace.o -fopenmp R_init_randomForestRHF.c:23:13: warning: type of ‘entryPred’ does not match original declaration [-Wlto-type-mismatch] 23 | extern SEXP entryPred(SEXP, SEXP, SEXP, SEXP, | ^ entry.c:226:6: note: type mismatch in parameter 41 226 | SEXP entryPred(SEXP traceFlag, | ^ entry.c:226:6: note: type ‘void’ should match type ‘struct SEXPREC *’ entry.c:226:6: note: ‘entryPred’ was previously declared here R_init_randomForestRHF.c:17:13: warning: type of ‘entryGrow’ does not match original declaration [-Wlto-type-mismatch] 17 | extern SEXP entryGrow(SEXP, SEXP, SEXP, SEXP, | ^ entry.c:22:6: note: type mismatch in parameter 25 22 | SEXP entryGrow(SEXP traceFlag, | ^ entry.c:22:6: note: type ‘struct SEXPREC *’ should match type ‘void’ entry.c:22:6: note: ‘entryGrow’ was previously declared here make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-LTO/randomForestRHF/src' installing to /data/gannet/ripley/R/packages/tests-LTO/Libs/randomForestRHF-lib/00LOCK-randomForestRHF/00new/randomForestRHF/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (randomForestRHF) Time 5:15.26, 55.22 + 4.78