* installing *source* package ‘knncat’ ...
** package ‘knncat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-LTO/knncat/src'
gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG   -I/usr/local/include  -I . -DUSE_R_ALLOC -DCALL_FROM_R -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -c com.c -o com.o
gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG   -I/usr/local/include  -I . -DUSE_R_ALLOC -DCALL_FROM_R -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -c dodisc.c -o dodisc.o
dodisc.c: In function ‘do_discriminant’:
dodisc.c:217:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  217 |         if (verbose >= 1)
      |         ^~
dodisc.c:220:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  220 |             if (cost == (MATRIX *) NULL)
      |             ^~
gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG   -I/usr/local/include  -I . -DUSE_R_ALLOC -DCALL_FROM_R -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -c donn.c -o donn.o
gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG   -I/usr/local/include  -I . -DUSE_R_ALLOC -DCALL_FROM_R -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -c donnwrap.c -o donnwrap.o
gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG   -I/usr/local/include  -I . -DUSE_R_ALLOC -DCALL_FROM_R -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -c dsort.c -o dsort.o
gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG   -I/usr/local/include  -I . -DUSE_R_ALLOC -DCALL_FROM_R -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -c linpack.c -o linpack.o
gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG   -I/usr/local/include  -I . -DUSE_R_ALLOC -DCALL_FROM_R -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -c matrix.c -o matrix.o
matrix.c: In function ‘read_matrix’:
matrix.c:926:40: warning: comparison between pointer and zero character constant [-Wpointer-compare]
  926 |  if (fgets (in_buffer, CHUNK, in_file) == '\0')
      |                                        ^~
matrix.c:926:6: note: did you mean to dereference the pointer?
  926 |  if (fgets (in_buffer, CHUNK, in_file) == '\0')
      |      ^
gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG   -I/usr/local/include  -I . -DUSE_R_ALLOC -DCALL_FROM_R -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -c objective.c -o objective.o
gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG   -I/usr/local/include  -I . -DUSE_R_ALLOC -DCALL_FROM_R -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -c ords.c -o ords.o
ords.c: In function ‘ord’:
ords.c:375:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  375 | if (classification == DISCRIMINATION)
      | ^~
ords.c:377:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  377 |     if (last_w_inv_m_mat == (MATRIX *) NULL) { /* do nothing */ }
      |     ^~
gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG   -I/usr/local/include  -I . -DUSE_R_ALLOC -DCALL_FROM_R -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -c ranlib.c -o ranlib.o
gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG   -I/usr/local/include  -I . -DUSE_R_ALLOC -DCALL_FROM_R -fpic  -g -O2 -Wall -pedantic -mtune=native -flto -c utilsR.c -o utilsR.o
gcc -shared -g -O2 -Wall -pedantic -mtune=native -flto -fpic -L/usr/local/lib64 -o knncat.so com.o dodisc.o donn.o donnwrap.o dsort.o linpack.o matrix.o objective.o ords.o ranlib.o utilsR.o -L/data/gannet/ripley/R/LTO/lib -lRlapack -L/data/gannet/ripley/R/LTO/lib -lRblas -lgfortran -lm -lquadmath
dodisc.c:29:14: warning: type of ‘increase’ does not match original declaration [-Wlto-type-mismatch]
   29 | extern long *increase;
      |              ^
ords.c:150:8: note: type ‘int’ should match type ‘long int’
  150 | Slong *increase;
      |        ^
ords.c:150:8: note: ‘increase’ was previously declared here
ords.c:150:8: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-LTO/knncat/src'
installing to /data/gannet/ripley/R/packages/tests-LTO/Libs/knncat-lib/00LOCK-knncat/00new/knncat/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (knncat)
Time 0:16.82, 8.47 + 0.85