* installing *source* package ‘hierNest’ ... ** this is package ‘hierNest’ version ‘1.0.0’ ** package ‘hierNest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ using Fortran compiler: ‘GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-LTO/hierNest/src' gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -flto=10 -c spmatmul.f90 -o spmatmul.o gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -flto=10 -c log_sgl_subfuns.f90 -o log_sgl_subfuns.o log_sgl_subfuns.f90:50:13: 50 | subgp_ix = drgix(i) - drgix(startsubgp) +2 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] log_sgl_subfuns.f90:51:12: 51 | subgp_iy = drgiy(i) - drgix(startsubgp) +2 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] log_sgl_subfuns.f90:150:11: 150 | subgp_ix = drgix(i) - drgix(startsubgp) +2 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] log_sgl_subfuns.f90:151:10: 151 | subgp_iy = drgiy(i) - drgix(startsubgp) +2 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] log_sgl_subfuns.f90:15:27: 15 | DOUBLE PRECISION :: ss | 1~ Warning: Unused variable ‘ss’ declared at (1) [-Wunused-variable] gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -flto=10 -c sgl_subfuns.f90 -o sgl_subfuns.o sgl_subfuns.f90:61:10: 61 | enddrg=cn_e(g) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sgl_subfuns.f90:62:10: 62 | theta_tilt=b(startix:endix) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sgl_subfuns.f90:65:10: 65 | DO drginx = startdrg, enddrg | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sgl_subfuns.f90:66:10: 66 | drgstartinx=drgix(drginx) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sgl_subfuns.f90:67:10: 67 | drgendinx=drgiy(drginx) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sgl_subfuns.f90:77:10: 77 | ENDDO | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sgl_subfuns.f90:227:12: 227 | DO drginx = startdrg, enddrg | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sgl_subfuns.f90:228:12: 228 | drgstartinx=drgix(drginx) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sgl_subfuns.f90:229:12: 229 | drgendinx=drgiy(drginx) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sgl_subfuns.f90:240:12: 240 | ENDDO | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sgl_subfuns.f90:406:12: 406 | DO drginx = startdrg, enddrg | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sgl_subfuns.f90:407:12: 407 | drgstartinx=drgix(drginx) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sgl_subfuns.f90:408:12: 408 | drgendinx=drgiy(drginx) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sgl_subfuns.f90:417:12: 417 | ENDDO | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sgl_subfuns.f90:409:30: 409 | theta_drg_norm= SQRT(DOT_PRODUCT(b(drgstartinx: drgendinx), b(drgstartinx: drgendinx))) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] sgl_subfuns.f90:230:30: 230 | theta_drg_norm= SQRT(DOT_PRODUCT(b(drgstartinx: drgendinx), b(drgstartinx: drgendinx))) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] sgl_subfuns.f90:68:28: 68 | theta_drg_norm= SQRT(DOT_PRODUCT(b(drgstartinx: drgendinx), b(drgstartinx: drgendinx))) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -flto=10 -c sparsegl.f90 -o sparsegl.o sparsegl.f90:222:14: 222 | DO drginx = startdrg, enddrg | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegl.f90:223:14: 223 | drgstartinx=drgix(drginx) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegl.f90:224:14: 224 | drgendinx=drgiy(drginx) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegl.f90:233:14: 233 | ENDDO | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegl.f90:520:14: 520 | DO drginx = startdrg, enddrg | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegl.f90:521:14: 521 | drgstartinx=drgix(drginx) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegl.f90:522:14: 522 | drgendinx=drgiy(drginx) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegl.f90:531:14: 531 | ENDDO | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegl.f90:225:32: 225 | theta_drg_norm= SQRT(DOT_PRODUCT(b(drgstartinx: drgendinx), b(drgstartinx: drgendinx))) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] sparsegl.f90:523:32: 523 | theta_drg_norm= SQRT(DOT_PRODUCT(b(drgstartinx: drgendinx), b(drgstartinx: drgendinx))) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] sparsegl.f90:23:22: 23 | INTEGER:: endsubgp,drgdim | 1~~~~~ Warning: Unused variable ‘drgdim’ declared at (1) [-Wunused-variable] sparsegl.f90:316:22: 316 | INTEGER:: endsubgp,drgdim | 1~~~~~ Warning: Unused variable ‘drgdim’ declared at (1) [-Wunused-variable] gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -flto=10 -c sparsegllog.f90 -o sparsegllog.o sparsegllog.f90:236:14: 236 | DO drginx = startdrg, enddrg | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegllog.f90:237:14: 237 | drgstartinx=drgix(drginx) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegllog.f90:238:14: 238 | drgendinx=drgiy(drginx) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegllog.f90:247:14: 247 | ENDDO | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegllog.f90:550:14: 550 | DO drginx = startdrg, enddrg | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegllog.f90:551:14: 551 | drgstartinx=drgix(drginx) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegllog.f90:552:14: 552 | drgendinx=drgiy(drginx) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegllog.f90:561:14: 561 | ENDDO | 1 Warning: Nonconforming tab character at (1) [-Wtabs] sparsegllog.f90:239:32: 239 | theta_drg_norm= SQRT(DOT_PRODUCT(b(drgstartinx: drgendinx), b(drgstartinx: drgendinx))) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] sparsegllog.f90:553:32: 553 | theta_drg_norm= SQRT(DOT_PRODUCT(b(drgstartinx: drgendinx), b(drgstartinx: drgendinx))) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] sparsegllog.f90:22:22: 22 | INTEGER:: endsubgp,drgdim | 1~~~~~ Warning: Unused variable ‘drgdim’ declared at (1) [-Wunused-variable] sparsegllog.f90:336:22: 336 | INTEGER:: endsubgp,drgdim | 1~~~~~ Warning: Unused variable ‘drgdim’ declared at (1) [-Wunused-variable] gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -flto=10 -c wsgl.f90 -o wsgl.o wsgl.f90:3:25: 3 | npass,jerr,alsparse1,alsparse2,lb,ub,sset,eset,b0old,betaold,al0,findlambda,l,me,cn) | 1~~~~~~~~ Warning: Unused dummy argument ‘alsparse2’ at (1) [-Wunused-dummy-argument] wsgl.f90:219:25: 219 | npass,jerr,alsparse1,alsparse2,lb,ub,sset,eset,b0old,betaold,al0,findlambda,l,me,cn) | 1~~~~~~~~ Warning: Unused dummy argument ‘alsparse2’ at (1) [-Wunused-dummy-argument] gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c sparsegl_init.c -o sparsegl_init.o gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -fpic -L/usr/local/lib64 -o hierNest.so log_sgl_subfuns.o sgl_subfuns.o sparsegl.o sparsegl_init.o sparsegllog.o spmatmul.o wsgl.o -lgfortran -lm -lquadmath sparsegl_init.c:364:6: warning: type of ‘spmat_wsgl_’ does not match original declaration [-Wlto-type-mismatch] 364 | void F77_NAME(spmat_wsgl)( | ^ wsgl.f90:217:1: note: type mismatch in parameter 38 217 | SUBROUTINE spmat_wsgl (bn,bs,ix,iy,gam,nobs,nvars,x,xidx,xcptr,nnz,r,pf,pfl1,pmax,& | ^ wsgl.f90:217:1: note: ‘spmat_wsgl’ was previously declared here wsgl.f90:217:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used sparsegl_init.c:290:6: warning: type of ‘wsgl_’ does not match original declaration [-Wlto-type-mismatch] 290 | void F77_NAME(wsgl)( | ^ wsgl.f90:1:1: note: type mismatch in parameter 35 1 | SUBROUTINE wsgl (bn,bs,ix,iy,gam,nobs,nvars,x,r,pf,pfl1,pmax,& | ^ wsgl.f90:1:1: note: ‘wsgl’ was previously declared here wsgl.f90:1:1: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used sparsegl_init.c:217:6: warning: type of ‘log_spmat_four_’ does not match original declaration [-Wlto-type-mismatch] 217 | void F77_NAME(log_spmat_four)( | ^ sparsegllog.f90:313:1: note: type mismatch in parameter 34 313 | SUBROUTINE log_spmat_four (bn,bs,ix,iy,gam,nobs,nvars,x,xidx,xcptr,nnz,y,pf,pfl1,& | ^ sparsegllog.f90:313:1: note: ‘log_spmat_four’ was previously declared here sparsegl_init.c:152:6: warning: type of ‘log_sparse_four_’ does not match original declaration [-Wlto-type-mismatch] 152 | void F77_NAME(log_sparse_four)( | ^ sparsegllog.f90:1:1: note: type mismatch in parameter 31 1 | SUBROUTINE log_sparse_four (bn,bs,ix,iy,gam,nobs,nvars,x,y,pf,pfl1,dfmax,pmax,& | ^ sparsegllog.f90:1:1: note: ‘log_sparse_four’ was previously declared here sparsegl_init.c:79:6: warning: type of ‘spmat_four_’ does not match original declaration [-Wlto-type-mismatch] 79 | void F77_NAME(spmat_four)( | ^ sparsegl.f90:294:1: note: type mismatch in parameter 35 294 | SUBROUTINE spmat_four (bn,bs,ix,iy,gam,nobs,nvars,x,xidx,xcptr,nnz,y,pf,pfl1,& | ^ sparsegl.f90:294:1: note: ‘spmat_four’ was previously declared here sparsegl_init.c:12:6: warning: type of ‘sparse_four_’ does not match original declaration [-Wlto-type-mismatch] 12 | void F77_NAME(sparse_four)( | ^ sparsegl.f90:4:1: note: type mismatch in parameter 32 4 | SUBROUTINE sparse_four (bn,bs,ix,iy,gam,nobs,nvars,x,y,pf,pfl1,dfmax,pmax,nlam,& | ^ sparsegl.f90:4:1: note: ‘sparse_four’ was previously declared here make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-LTO/hierNest/src' installing to /data/gannet/ripley/R/packages/tests-LTO/Libs/hierNest-lib/00LOCK-hierNest/00new/hierNest/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hierNest) Time 0:36.75, 31.54 + 1.78