* installing *source* package ‘gert’ ... ** this is package ‘gert’ version ‘2.3.0’ ** package ‘gert’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-DWITH_GZFILEOP Using PKG_LIBS=-lgit2 Configuration OK! ** libs using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-LTO/gert/src' gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c branch.c -o branch.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c clone.c -o clone.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c commit.c -o commit.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c config.c -o config.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c conflicts.c -o conflicts.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c files.c -o files.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c ignore.c -o ignore.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c init.c -o init.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c merge.c -o merge.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c rebase.c -o rebase.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c stash.c -o stash.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c submodules.c -o submodules.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c tag.c -o tag.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c utils.c -o utils.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c version.c -o version.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_GZFILEOP -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c worktree.c -o worktree.o gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -fpic -L/usr/local/lib64 -o gert.so branch.o clone.o commit.o config.o conflicts.o files.o ignore.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o worktree.o -lgit2 init.c:92:13: warning: type of ‘R_git_worktree_add’ does not match original declaration [-Wlto-type-mismatch] 92 | extern SEXP R_git_worktree_add(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP); | ^ worktree.c:143:6: note: type mismatch in parameter 7 143 | SEXP R_git_worktree_add( | ^ worktree.c:143:6: note: type ‘void’ should match type ‘struct SEXPREC *’ worktree.c:143:6: note: ‘R_git_worktree_add’ was previously declared here make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-LTO/gert/src' installing to /data/gannet/ripley/R/packages/tests-LTO/Libs/gert-lib/00LOCK-gert/00new/gert/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gert) Time 0:26.37, 11.06 + 1.82