* installing *source* package ‘geoRglm’ ... ** package ‘geoRglm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-LTO/geoRglm/src' gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c geoRgeoRglm.c -o geoRgeoRglm.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c geoRglm.c -o geoRglm.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c init.c -o init.o gcc -shared -g -O2 -Wall -pedantic -mtune=native -flto -fpic -L/usr/local/lib64 -o geoRglm.so geoRgeoRglm.o geoRglm.o init.o geoRglm.h:40:13: warning: type of ‘mcmc1binom’ does not match original declaration [-Wlto-type-mismatch] 40 | extern void mcmc1binom(long *n, double *zz, double *SS, double *data, double *units, double *meanS, double *QQ, double *QtivQ, | ^ geoRglm.c:1679:6: note: ‘mcmc1binom’ was previously declared here 1679 | void mcmc1binom(Integer *n, Real *zz, Real *SS, Real *data, Real *units, Real *meanS, Real *QQ, Real *QtivQ, | ^ geoRglm.c:1679:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used geoRglm.h:37:13: warning: type of ‘mcmc1poisboxcox’ does not match original declaration [-Wlto-type-mismatch] 37 | extern void mcmc1poisboxcox(long *n, double *zz, double *SS, double *data, double *units, double *meanS, double *QQ, double *QtivQ, | ^ geoRglm.c:1584:6: note: ‘mcmc1poisboxcox’ was previously declared here 1584 | void mcmc1poisboxcox(Integer *n, Real *zz, Real *SS, Real *data, Real *units, Real *meanS, Real *QQ, Real *QtivQ, | ^ geoRglm.c:1584:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used geoRglm.h:34:13: warning: type of ‘mcmc1poislog’ does not match original declaration [-Wlto-type-mismatch] 34 | extern void mcmc1poislog(long *n, double *zz, double *SS, double *data, double *meanS, double *QQ, double *QtivQ, | ^ geoRglm.c:1499:6: note: ‘mcmc1poislog’ was previously declared here 1499 | void mcmc1poislog(Integer *n, Real *zz, Real *SS, Real *data, Real *meanS, Real *QQ, Real *QtivQ, | ^ geoRglm.c:1499:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used geoRglm.h:29:13: warning: type of ‘mcmcrun5’ does not match original declaration [-Wlto-type-mismatch] 29 | extern void mcmcrun5(long *n, double *data, double *units, double *meanS, double *DDvbetaDD, long *cornr, double *kappa, double *tausq, | ^ geoRglm.c:1292:6: note: ‘mcmcrun5’ was previously declared here 1292 | void mcmcrun5(Integer *n, Real *data, Real *units, Real *meanS, Real *DDvbetaDD, Integer *cornr, Real *kappa, Real *tausq, | ^ geoRglm.c:1292:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used geoRglm.h:24:13: warning: type of ‘mcmcrun5boxcox’ does not match original declaration [-Wlto-type-mismatch] 24 | extern void mcmcrun5boxcox(long *n, double *data, double *units, double *meanS, double *DDvbetaDD, long *cornr, double *kappa, double *tausq, | ^ geoRglm.c:1075:6: note: ‘mcmcrun5boxcox’ was previously declared here 1075 | void mcmcrun5boxcox(Integer *n, Real *data, Real *units, Real *meanS, Real *DDvbetaDD, Integer *cornr, Real *kappa, Real *tausq, | ^ geoRglm.c:1075:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used geoRglm.h:19:13: warning: type of ‘mcmcrun5binom’ does not match original declaration [-Wlto-type-mismatch] 19 | extern void mcmcrun5binom(long *n, double *data, double *units, double *meanS, double *DDvbetaDD, long *cornr, double *kappa, double *tausq, | ^ geoRglm.c:873:6: note: ‘mcmcrun5binom’ was previously declared here 873 | void mcmcrun5binom(Integer *n, Real *data, Real *units, Real *meanS, Real *DDvbetaDD, Integer *cornr, Real *kappa, Real *tausq, | ^ geoRglm.c:873:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used geoRglm.h:14:13: warning: type of ‘mcmcrun4binom’ does not match original declaration [-Wlto-type-mismatch] 14 | extern void mcmcrun4binom(long *n, double *data, double *units, double *DD, long *no_linpar, long *cornr, double *kappa, double *tausq, | ^ geoRglm.c:657:6: note: ‘mcmcrun4binom’ was previously declared here 657 | void mcmcrun4binom(Integer *n, Real *data, Real *units, Real *DD, Integer *no_linpar, Integer *cornr, Real *kappa, Real *tausq, | ^ geoRglm.c:657:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used geoRglm.h:9:13: warning: type of ‘mcmcrun4boxcox’ does not match original declaration [-Wlto-type-mismatch] 9 | extern void mcmcrun4boxcox(long *n, double *data, double *units, double *DD, long *no_linpar, long *cornr, double *kappa, double *tausq, | ^ geoRglm.c:425:6: note: ‘mcmcrun4boxcox’ was previously declared here 425 | void mcmcrun4boxcox(Integer *n, Real *data, Real *units, Real *DD, Integer *no_linpar, Integer *cornr, Real *kappa, Real *tausq, | ^ geoRglm.c:425:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used geoRglm.h:2:13: warning: type of ‘binitprod’ does not match original declaration [-Wlto-type-mismatch] 2 | extern void binitprod(long *n, double *xc, double *yc, double *sim, long *nbins, double *lims, double *maxdist, long *cbin, double *vbin); | ^ geoRglm.c:20:6: note: ‘binitprod’ was previously declared here 20 | void binitprod(Integer *n, Real *xc, Real *yc, Real *sim, Integer *nbins, Real *lims, Real *maxdist, Integer *cbin, Real *vbin) | ^ geoRglm.c:20:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used geoR.h:5:8: warning: type of ‘corrfctvalue’ does not match original declaration [-Wlto-type-mismatch] 5 | double corrfct(double, double, double, int); | ^ geoRgeoRglm.c:37:6: note: type mismatch in parameter 4 37 | Real corrfctvalue(Real phi, Real kappa, Real h, Integer cornr) | ^ geoRgeoRglm.c:37:6: note: type ‘long int’ should match type ‘int’ geoRgeoRglm.c:37:6: note: ‘corrfctvalue’ was previously declared here geoRgeoRglm.c:37:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-LTO/geoRglm/src' installing to /data/gannet/ripley/R/packages/tests-LTO/Libs/geoRglm-lib/00LOCK-geoRglm/00new/geoRglm/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geoRglm) Time 0:57.46, 21.45 + 2.75