* installing *source* package ‘fasterize’ ...
** package ‘fasterize’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-LTO/fasterize/src'
g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO9/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-3.7/Rcpp/include' -I'/data/gannet/ripley/R/test-3.7/RcppArmadillo/include' -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO9/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-3.7/Rcpp/include' -I'/data/gannet/ripley/R/test-3.7/RcppArmadillo/include' -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c check_inputs.cpp -o check_inputs.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO9/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-3.7/Rcpp/include' -I'/data/gannet/ripley/R/test-3.7/RcppArmadillo/include' -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c edgelist.cpp -o edgelist.o
edgelist.cpp: In function ‘void edgelist(Rcpp::RObject, RasterInfo&, std::__cxx11::list<Edge>&)’:
edgelist.cpp:18:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   18 |     for(size_t i = 0; i < (poly.nrow() - 1); ++i) {
      |                       ~~^~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO9/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-3.7/Rcpp/include' -I'/data/gannet/ripley/R/test-3.7/RcppArmadillo/include' -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c fasterize.cpp -o fasterize.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO9/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-3.7/Rcpp/include' -I'/data/gannet/ripley/R/test-3.7/RcppArmadillo/include' -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c pixelfn.cpp -o pixelfn.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO9/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-3.7/Rcpp/include' -I'/data/gannet/ripley/R/test-3.7/RcppArmadillo/include' -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c rasterize_polygon.cpp -o rasterize_polygon.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO9/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-3.7/Rcpp/include' -I'/data/gannet/ripley/R/test-3.7/RcppArmadillo/include' -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c utils.cpp -o utils.o
utils.cpp: In function ‘Rcpp::CharacterVector as_character(Rcpp::RObject)’:
utils.cpp:11:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   11 |     for(size_t i = 0; i < ints.size(); i++) {
      |                       ~~^~~~~~~~~~~~~
g++ -std=gnu++11 -shared -L/usr/local/lib64 -o fasterize.so RcppExports.o check_inputs.o edgelist.o fasterize.o pixelfn.o rasterize_polygon.o utils.o
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:82:10: warning: type ‘struct opts’ violates the C++ One Definition Rule [-Wodr]
   82 |   struct opts
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:82:10: note: a different type is defined in another translation unit
   82 |   struct opts
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:84:17: note: the first difference of corresponding definitions is field ‘flags’
   84 |     const uword flags;
      |                 ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:84:17: note: a field of same name but different type is defined in another translation unit
   84 |     const uword flags;
      |                 ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:121:10: warning: type ‘struct opts_none’ violates the C++ One Definition Rule [-Wodr]
  121 |   struct opts_none         : public opts { inline opts_none()         : opts(flag_none        ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:121:10: note: a type with different bases is defined in another translation unit
  121 |   struct opts_none         : public opts { inline opts_none()         : opts(flag_none        ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:122:10: warning: type ‘struct opts_fast’ violates the C++ One Definition Rule [-Wodr]
  122 |   struct opts_fast         : public opts { inline opts_fast()         : opts(flag_fast        ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:122:10: note: a type with different bases is defined in another translation unit
  122 |   struct opts_fast         : public opts { inline opts_fast()         : opts(flag_fast        ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:123:10: warning: type ‘struct opts_equilibrate’ violates the C++ One Definition Rule [-Wodr]
  123 |   struct opts_equilibrate  : public opts { inline opts_equilibrate()  : opts(flag_equilibrate ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:123:10: note: a type with different bases is defined in another translation unit
  123 |   struct opts_equilibrate  : public opts { inline opts_equilibrate()  : opts(flag_equilibrate ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:124:10: warning: type ‘struct opts_no_approx’ violates the C++ One Definition Rule [-Wodr]
  124 |   struct opts_no_approx    : public opts { inline opts_no_approx()    : opts(flag_no_approx   ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:124:10: note: a type with different bases is defined in another translation unit
  124 |   struct opts_no_approx    : public opts { inline opts_no_approx()    : opts(flag_no_approx   ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:125:10: warning: type ‘struct opts_triu’ violates the C++ One Definition Rule [-Wodr]
  125 |   struct opts_triu         : public opts { inline opts_triu()         : opts(flag_triu        ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:125:10: note: a type with different bases is defined in another translation unit
  125 |   struct opts_triu         : public opts { inline opts_triu()         : opts(flag_triu        ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:126:10: warning: type ‘struct opts_tril’ violates the C++ One Definition Rule [-Wodr]
  126 |   struct opts_tril         : public opts { inline opts_tril()         : opts(flag_tril        ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:126:10: note: a type with different bases is defined in another translation unit
  126 |   struct opts_tril         : public opts { inline opts_tril()         : opts(flag_tril        ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:127:10: warning: type ‘struct opts_no_band’ violates the C++ One Definition Rule [-Wodr]
  127 |   struct opts_no_band      : public opts { inline opts_no_band()      : opts(flag_no_band     ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:127:10: note: a type with different bases is defined in another translation unit
  127 |   struct opts_no_band      : public opts { inline opts_no_band()      : opts(flag_no_band     ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:128:10: warning: type ‘struct opts_no_sympd’ violates the C++ One Definition Rule [-Wodr]
  128 |   struct opts_no_sympd     : public opts { inline opts_no_sympd()     : opts(flag_no_sympd    ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:128:10: note: a type with different bases is defined in another translation unit
  128 |   struct opts_no_sympd     : public opts { inline opts_no_sympd()     : opts(flag_no_sympd    ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:129:10: warning: type ‘struct opts_allow_ugly’ violates the C++ One Definition Rule [-Wodr]
  129 |   struct opts_allow_ugly   : public opts { inline opts_allow_ugly()   : opts(flag_allow_ugly  ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:129:10: note: a type with different bases is defined in another translation unit
  129 |   struct opts_allow_ugly   : public opts { inline opts_allow_ugly()   : opts(flag_allow_ugly  ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:130:10: warning: type ‘struct opts_likely_sympd’ violates the C++ One Definition Rule [-Wodr]
  130 |   struct opts_likely_sympd : public opts { inline opts_likely_sympd() : opts(flag_likely_sympd) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:130:10: note: a type with different bases is defined in another translation unit
  130 |   struct opts_likely_sympd : public opts { inline opts_likely_sympd() : opts(flag_likely_sympd) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:131:10: warning: type ‘struct opts_refine’ violates the C++ One Definition Rule [-Wodr]
  131 |   struct opts_refine       : public opts { inline opts_refine()       : opts(flag_refine      ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:131:10: note: a type with different bases is defined in another translation unit
  131 |   struct opts_refine       : public opts { inline opts_refine()       : opts(flag_refine      ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:132:10: warning: type ‘struct opts_no_trimat’ violates the C++ One Definition Rule [-Wodr]
  132 |   struct opts_no_trimat    : public opts { inline opts_no_trimat()    : opts(flag_no_trimat   ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/glue_solve_bones.hpp:132:10: note: a type with different bases is defined in another translation unit
  132 |   struct opts_no_trimat    : public opts { inline opts_no_trimat()    : opts(flag_no_trimat   ) {} };
      |          ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:21:8: warning: type ‘struct gmm_dist_mode’ violates the C++ One Definition Rule [-Wodr]
   21 | struct gmm_dist_mode { const uword id;  inline explicit gmm_dist_mode(const uword in_id) : id(in_id) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:21:8: note: a different type is defined in another translation unit
   21 | struct gmm_dist_mode { const uword id;  inline explicit gmm_dist_mode(const uword in_id) : id(in_id) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:21:36: note: the first difference of corresponding definitions is field ‘id’
   21 | struct gmm_dist_mode { const uword id;  inline explicit gmm_dist_mode(const uword in_id) : id(in_id) {} };
      |                                    ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:21:36: note: a field of same name but different type is defined in another translation unit
   21 | struct gmm_dist_mode { const uword id;  inline explicit gmm_dist_mode(const uword in_id) : id(in_id) {} };
      |                                    ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:26:8: warning: type ‘struct gmm_dist_eucl’ violates the C++ One Definition Rule [-Wodr]
   26 | struct gmm_dist_eucl : public gmm_dist_mode { inline gmm_dist_eucl() : gmm_dist_mode(1) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:26:8: note: a type with different bases is defined in another translation unit
   26 | struct gmm_dist_eucl : public gmm_dist_mode { inline gmm_dist_eucl() : gmm_dist_mode(1) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:27:8: warning: type ‘struct gmm_dist_maha’ violates the C++ One Definition Rule [-Wodr]
   27 | struct gmm_dist_maha : public gmm_dist_mode { inline gmm_dist_maha() : gmm_dist_mode(2) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:27:8: note: a type with different bases is defined in another translation unit
   27 | struct gmm_dist_maha : public gmm_dist_mode { inline gmm_dist_maha() : gmm_dist_mode(2) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:28:8: warning: type ‘struct gmm_dist_prob’ violates the C++ One Definition Rule [-Wodr]
   28 | struct gmm_dist_prob : public gmm_dist_mode { inline gmm_dist_prob() : gmm_dist_mode(3) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:28:8: note: a type with different bases is defined in another translation unit
   28 | struct gmm_dist_prob : public gmm_dist_mode { inline gmm_dist_prob() : gmm_dist_mode(3) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:36:8: warning: type ‘struct gmm_seed_mode’ violates the C++ One Definition Rule [-Wodr]
   36 | struct gmm_seed_mode { const uword id; inline explicit gmm_seed_mode(const uword in_id) : id(in_id) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:36:8: note: a different type is defined in another translation unit
   36 | struct gmm_seed_mode { const uword id; inline explicit gmm_seed_mode(const uword in_id) : id(in_id) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:36:36: note: the first difference of corresponding definitions is field ‘id’
   36 | struct gmm_seed_mode { const uword id; inline explicit gmm_seed_mode(const uword in_id) : id(in_id) {} };
      |                                    ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:36:36: note: a field of same name but different type is defined in another translation unit
   36 | struct gmm_seed_mode { const uword id; inline explicit gmm_seed_mode(const uword in_id) : id(in_id) {} };
      |                                    ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:41:8: warning: type ‘struct gmm_seed_keep_existing’ violates the C++ One Definition Rule [-Wodr]
   41 | struct gmm_seed_keep_existing : public gmm_seed_mode { inline gmm_seed_keep_existing() : gmm_seed_mode(1) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:41:8: note: a type with different bases is defined in another translation unit
   41 | struct gmm_seed_keep_existing : public gmm_seed_mode { inline gmm_seed_keep_existing() : gmm_seed_mode(1) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:42:8: warning: type ‘struct gmm_seed_static_subset’ violates the C++ One Definition Rule [-Wodr]
   42 | struct gmm_seed_static_subset : public gmm_seed_mode { inline gmm_seed_static_subset() : gmm_seed_mode(2) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:42:8: note: a type with different bases is defined in another translation unit
   42 | struct gmm_seed_static_subset : public gmm_seed_mode { inline gmm_seed_static_subset() : gmm_seed_mode(2) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:43:8: warning: type ‘struct gmm_seed_static_spread’ violates the C++ One Definition Rule [-Wodr]
   43 | struct gmm_seed_static_spread : public gmm_seed_mode { inline gmm_seed_static_spread() : gmm_seed_mode(3) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:43:8: note: a type with different bases is defined in another translation unit
   43 | struct gmm_seed_static_spread : public gmm_seed_mode { inline gmm_seed_static_spread() : gmm_seed_mode(3) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:44:8: warning: type ‘struct gmm_seed_random_subset’ violates the C++ One Definition Rule [-Wodr]
   44 | struct gmm_seed_random_subset : public gmm_seed_mode { inline gmm_seed_random_subset() : gmm_seed_mode(4) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:44:8: note: a type with different bases is defined in another translation unit
   44 | struct gmm_seed_random_subset : public gmm_seed_mode { inline gmm_seed_random_subset() : gmm_seed_mode(4) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:45:8: warning: type ‘struct gmm_seed_random_spread’ violates the C++ One Definition Rule [-Wodr]
   45 | struct gmm_seed_random_spread : public gmm_seed_mode { inline gmm_seed_random_spread() : gmm_seed_mode(5) {} };
      |        ^
/data/gannet/ripley/R/test-3.7/RcppArmadillo/include/armadillo_bits/gmm_misc_bones.hpp:45:8: note: a type with different bases is defined in another translation unit
   45 | struct gmm_seed_random_spread : public gmm_seed_mode { inline gmm_seed_random_spread() : gmm_seed_mode(5) {} };
      |        ^
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-LTO/fasterize/src'
installing to /data/gannet/ripley/R/packages/tests-LTO/Libs/fasterize-lib/00LOCK-fasterize/00new/fasterize/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fasterize)
Time 7:04.95, 114.65 + 7.37