* installing *source* package ‘ernest’ ...
** this is package ‘ernest’ version ‘1.2.4’
** package ‘ernest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-LTO/ernest/src'
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11eigen/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c KMeansRexCore.cpp -o KMeansRexCore.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11eigen/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c cpp11.cpp -o cpp11.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11eigen/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c ellipsoid.cpp -o ellipsoid.o
In file included from ellipsoid.h:17,
                 from ellipsoid.cpp:10:
utils.h: In function ‘void ern::ReflectWithinUnitCube(Ref<Eigen::Matrix<double, 1, -1> >)’:
utils.h:71:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Ref<Eigen::Matrix<double, 1, -1>, 0, Eigen::InnerStride<1> > >::Index’ {aka ‘long int’} [-Wsign-compare]
   71 |   for (size_t i = 0; i < vec.size(); ++i) {
      |                      ~~^~~~~~~~~~~~
ellipsoid.cpp: In member function ‘std::__cxx11::list<vol::Ellipsoid> vol::Ellipsoid::Split(ern::ConstRef<Eigen::Matrix<double, -1, -1> >, double, int) const’:
ellipsoid.cpp:216:19: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  216 |   if (idx0.size() < 2 * nvar_ || idx1.size() < 2 * nvar_) {
      |       ~~~~~~~~~~~~^~~~~~~~~~~
ellipsoid.cpp:216:46: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  216 |   if (idx0.size() < 2 * nvar_ || idx1.size() < 2 * nvar_) {
      |                                  ~~~~~~~~~~~~^~~~~~~~~~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11eigen/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c exported_utils.cpp -o exported_utils.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11eigen/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c propose-impl.cpp -o propose-impl.o
In file included from ellipsoid.h:17,
                 from rectangle.h:12,
                 from propose-impl.cpp:11:
utils.h: In function ‘void ern::ReflectWithinUnitCube(Ref<Eigen::Matrix<double, 1, -1> >)’:
utils.h:71:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Ref<Eigen::Matrix<double, 1, -1>, 0, Eigen::InnerStride<1> > >::Index’ {aka ‘long int’} [-Wsign-compare]
   71 |   for (size_t i = 0; i < vec.size(); ++i) {
      |                      ~~^~~~~~~~~~~~
rectangle.h: In member function ‘ern::Vector vol::Rectangle::UniformSample() const’:
rectangle.h:37:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
   37 |     for (size_t d = 0; d < nvar_; d++) {
      |                        ~~^~~~~~~
propose-impl.cpp: In function ‘cpp11::list RandomWalkImpl(cpp11::doubles, cpp11::function, double, int, double)’:
propose-impl.cpp:26:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   26 |   for (size_t draw = 0; draw < steps; draw++) {
      |                         ~~~~~^~~~~~~
propose-impl.cpp: In function ‘cpp11::list SliceImpl(cpp11::doubles, cpp11::function, double, cpp11::doubles, cpp11::doubles, int)’:
propose-impl.cpp:57:15: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
   57 |   for (; draw < max_loop; draw++) {
      |          ~~~~~^~~~~~~~~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11eigen/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c rectangle.cpp -o rectangle.o
In file included from ellipsoid.h:17,
                 from rectangle.h:12,
                 from rectangle.cpp:10:
utils.h: In function ‘void ern::ReflectWithinUnitCube(Ref<Eigen::Matrix<double, 1, -1> >)’:
utils.h:71:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Ref<Eigen::Matrix<double, 1, -1>, 0, Eigen::InnerStride<1> > >::Index’ {aka ‘long int’} [-Wsign-compare]
   71 |   for (size_t i = 0; i < vec.size(); ++i) {
      |                      ~~^~~~~~~~~~~~
rectangle.h: In member function ‘ern::Vector vol::Rectangle::UniformSample() const’:
rectangle.h:37:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
   37 |     for (size_t d = 0; d < nvar_; d++) {
      |                        ~~^~~~~~~
rectangle.cpp: In member function ‘bool vol::Rectangle::Clamp(ern::ConstRef<Eigen::Matrix<double, -1, 1> >, ern::ConstRef<Eigen::Matrix<double, -1, 1> >)’:
rectangle.cpp:22:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   22 |   for (size_t d = 0; d < nvar_; d++) {
      |                      ~~^~~~~~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11eigen/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c test-bounding.cpp -o test-bounding.o
In file included from ellipsoid.h:17,
                 from test-bounding.cpp:12:
utils.h: In function ‘void ern::ReflectWithinUnitCube(Ref<Eigen::Matrix<double, 1, -1> >)’:
utils.h:71:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Ref<Eigen::Matrix<double, 1, -1>, 0, Eigen::InnerStride<1> > >::Index’ {aka ‘long int’} [-Wsign-compare]
   71 |   for (size_t i = 0; i < vec.size(); ++i) {
      |                      ~~^~~~~~~~~~~~
In file included from test-bounding.cpp:13:
rectangle.h: In member function ‘ern::Vector vol::Rectangle::UniformSample() const’:
rectangle.h:37:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
   37 |     for (size_t d = 0; d < nvar_; d++) {
      |                        ~~^~~~~~~
test-bounding.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____0()’:
test-bounding.cpp:79:19: warning: variable ‘shape’ set but not used [-Wunused-but-set-variable]
   79 |   Eigen::Matrix2d shape = Eigen::Matrix2d::Identity();
      |                   ^~~~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11eigen/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c test-random_vector.cpp -o test-random_vector.o
In file included from test-random_vector.cpp:13:
utils.h: In function ‘void ern::ReflectWithinUnitCube(Ref<Eigen::Matrix<double, 1, -1> >)’:
utils.h:71:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Ref<Eigen::Matrix<double, 1, -1>, 0, Eigen::InnerStride<1> > >::Index’ {aka ‘long int’} [-Wsign-compare]
   71 |   for (size_t i = 0; i < vec.size(); ++i) {
      |                      ~~^~~~~~~~~~~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11eigen/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c test-runner.cpp -o test-runner.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DEIGEN_DONT_PARALLELIZE -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11eigen/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c update_lrps-impl.cpp -o update_lrps-impl.o
In file included from ellipsoid.h:17,
                 from update_lrps-impl.cpp:16:
utils.h: In function ‘void ern::ReflectWithinUnitCube(Ref<Eigen::Matrix<double, 1, -1> >)’:
utils.h:71:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Ref<Eigen::Matrix<double, 1, -1>, 0, Eigen::InnerStride<1> > >::Index’ {aka ‘long int’} [-Wsign-compare]
   71 |   for (size_t i = 0; i < vec.size(); ++i) {
      |                      ~~^~~~~~~~~~~~
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o ernest.so KMeansRexCore.o cpp11.o ellipsoid.o exported_utils.o propose-impl.o rectangle.o test-bounding.o test-random_vector.o test-runner.o update_lrps-impl.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
cpp11.cpp:60:13: warning: ‘run_testthat_tests’ violates the C++ One Definition Rule [-Wodr]
   60 | extern SEXP run_testthat_tests(void *);
      |             ^
/data/gannet/ripley/R/test-dev/testthat/include/testthat/testthat.h:172:17: note: ‘run_testthat_tests’ was previously declared here
  172 | extern "C" SEXP run_testthat_tests(SEXP use_xml_sxp) {
      |                 ^
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-LTO/ernest/src'
installing to /data/gannet/ripley/R/packages/tests-LTO/Libs/ernest-lib/00LOCK-ernest/00new/ernest/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ernest)
Time 2:00.84, 148.14 + 9.68