* installing *source* package ‘eco’ ... ** package ‘eco’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-LTO/eco/src' gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c bayes.c -o bayes.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c fintegrate.c -o fintegrate.o fintegrate.c: In function ‘NormConstT’: fintegrate.c:38:17: warning: variable ‘inp’ set but not used [-Wunused-but-set-variable] 38 | double dtemp, inp, pfact; | ^~~ fintegrate.c:37:13: warning: variable ‘Y’ set but not used [-Wunused-but-set-variable] 37 | double X, Y, rho; | ^ fintegrate.c:37:10: warning: variable ‘X’ set but not used [-Wunused-but-set-variable] 37 | double X, Y, rho; | ^ fintegrate.c: In function ‘SuffExp’: fintegrate.c:105:10: warning: variable ‘inp’ set but not used [-Wunused-but-set-variable] 105 | double inp,density,pfact,normc; | ^~~ fintegrate.c: In function ‘getLogLikelihood’: fintegrate.c:181:14: warning: variable ‘lik’ set but not used [-Wunused-but-set-variable] 181 | double lik,sigma2,val,mu; | ^~~ gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c gibbsBase.c -o gibbsBase.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c gibbsBase2C.c -o gibbsBase2C.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c gibbsBaseRC.c -o gibbsBaseRC.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c gibbsDP.c -o gibbsDP.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c gibbsEM.c -o gibbsEM.o gibbsEM.c: In function ‘ecoEStep’: gibbsEM.c:360:17: warning: variable ‘testdens’ set but not used [-Wunused-but-set-variable] 360 | double loglik,testdens; | ^~~~~~~~ gibbsEM.c: In function ‘ecoMStepNCAR’: gibbsEM.c:570:22: warning: variable ‘t_samp’ set but not used [-Wunused-but-set-variable] 570 | int ii,i,j,verbose,t_samp; | ^~~~~~ gibbsEM.c:570:14: warning: variable ‘verbose’ set but not used [-Wunused-but-set-variable] 570 | int ii,i,j,verbose,t_samp; | ^~~~~~~ gibbsEM.c: In function ‘ecoMStepCCAR’: gibbsEM.c:736:22: warning: variable ‘t_samp’ set but not used [-Wunused-but-set-variable] 736 | int ii,i,j,verbose,t_samp; | ^~~~~~ gibbsEM.c:736:14: warning: variable ‘verbose’ set but not used [-Wunused-but-set-variable] 736 | int ii,i,j,verbose,t_samp; | ^~~~~~~ gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c gibbsXBase.c -o gibbsXBase.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c gibbsXDP.c -o gibbsXDP.o gibbsXDP.c: In function ‘cDPecoX’: gibbsXDP.c:431:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 431 | if (*verbose) | ^~ gibbsXDP.c:435:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 435 | PutRNGstate(); | ^~~~~~~~~~~ gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c gibbsZBase.c -o gibbsZBase.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c init.c -o init.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c preBaseX.c -o preBaseX.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c preDP.c -o preDP.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c preDPX.c -o preDPX.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c rand.c -o rand.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c sample.c -o sample.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c subroutines.c -o subroutines.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c vector.c -o vector.o gcc -shared -g -O2 -Wall -pedantic -mtune=native -flto -fpic -L/usr/local/lib64 -o eco.so bayes.o fintegrate.o gibbsBase.o gibbsBase2C.o gibbsBaseRC.o gibbsDP.o gibbsEM.o gibbsXBase.o gibbsXDP.o gibbsZBase.o init.o preBaseX.o preDP.o preDPX.o rand.o sample.o subroutines.o vector.o -L/data/gannet/ripley/R/LTO/lib -lRlapack -L/data/gannet/ripley/R/LTO/lib -lRblas -lgfortran -lm -lquadmath init.c:12:13: warning: type of ‘cBaseecoZ’ does not match original declaration [-Wlto-type-mismatch] 12 | extern void cBaseecoZ(void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *, void *); | ^ gibbsZBase.c:12:6: note: type mismatch in parameter 30 12 | void cBaseecoZ( | ^ gibbsZBase.c:12:6: note: ‘cBaseecoZ’ was previously declared here make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-LTO/eco/src' installing to /data/gannet/ripley/R/packages/tests-LTO/Libs/eco-lib/00LOCK-eco/00new/eco/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (eco) Time 0:48.60, 16.90 + 1.22