* installing *source* package ‘bayesianETAS’ ...
** this is package ‘bayesianETAS’ version ‘2.0.0’
** package ‘bayesianETAS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-LTO/bayesianETAS/src'
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c etas.cpp -o etas.o
etas.cpp: In function ‘int sampleDiscrete(std::vector<double>&)’:
etas.cpp:58:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   58 |         for (int i = 0; i < probs.size(); i++) {
      |                         ~~^~~~~~~~~~~~~~
etas.cpp:68:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   68 |         for (int i = 0; i < probs.size(); i++) {
      |                         ~~^~~~~~~~~~~~~~
etas.cpp: In function ‘double hBranchingPosteriorInteraction(std::vector<double>&, std::vector<double>&, std::vector<double>&, double, std::vector<double>&, double, double, double)’:
etas.cpp:129:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  129 |         for (int i = 0; i < z.size(); i++) {
      |                         ~~^~~~~~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c init.c -o init.o
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o bayesianETAS.so etas.o init.o
init.c:8:13: warning: type of ‘estimateSpatialBranchingC’ does not match original declaration [-Wlto-type-mismatch]
    8 | extern void estimateSpatialBranchingC(void);
      |             ^
etas.cpp:731:14: note: type mismatch in parameter 1
  731 |         void estimateSpatialBranchingC(double *ts, double *marks, double *xs, double *ys, int *n, double *M0, double *area, int *sims, double *mu, double *K, double *alpha, double *c, double *p, double *param1, double *param2, int *branchings, bool *gaussian) {
      |              ^
etas.cpp:731:14: note: ‘estimateSpatialBranchingC’ was previously declared here
init.c:7:13: warning: type of ‘estimateBranchingC’ does not match original declaration [-Wlto-type-mismatch]
    7 | extern void estimateBranchingC(void);
      |             ^
etas.cpp:708:14: note: type mismatch in parameter 1
  708 |         void estimateBranchingC(double *ts, double *marks, int *n, double *M0, int *sims, double *mu, double *K, double *alpha, double *c, double *p, int *branchings) {
      |              ^
etas.cpp:708:14: note: ‘estimateBranchingC’ was previously declared here
init.c:6:13: warning: type of ‘estimateETASDirectC’ does not match original declaration [-Wlto-type-mismatch]
    6 | extern void estimateETASDirectC(void);
      |             ^
etas.cpp:681:14: note: type mismatch in parameter 1
  681 |         void estimateETASDirectC(double *ts, double *marks, int *n, double *maxTime, double *M0, int *sims, double *mu, double *K, double *alpha, double *c, double *p, double *mus, double *Ks, double *alphas, double *cs, double *ps) {
      |              ^
etas.cpp:681:14: note: ‘estimateETASDirectC’ was previously declared here
init.c:5:13: warning: type of ‘estimateSpatialETASBranchingC’ does not match original declaration [-Wlto-type-mismatch]
    5 | extern void estimateSpatialETASBranchingC(void);
      |             ^
etas.cpp:636:14: note: type mismatch in parameter 1
  636 |         void estimateSpatialETASBranchingC(double *ts, double *marks, double *xs, double *ys, int *branching, int *n, double *maxTime, double *M0, double *area, int *sims, int *numMCMCSamples, double *mu, double *K, double *alpha, double *c, double *p, double *c_lower, double *param1, double *param2, double *sigma2_prior_shape, double *sigma2x_prior_rate, double *sigma2y_prior_rate, double *mus, double *Ks, double *alphas, double *cs, double *ps, double *param1s, double *param2s, int *cp_accept, int *cp_total, int *kappa_accept, int *kappa_total, bool *gaussian) {
      |              ^
etas.cpp:636:14: note: ‘estimateSpatialETASBranchingC’ was previously declared here
init.c:4:13: warning: type of ‘estimateETASBranchingC’ does not match original declaration [-Wlto-type-mismatch]
    4 | extern void estimateETASBranchingC(void);
      |             ^
etas.cpp:602:14: note: type mismatch in parameter 1
  602 |         void estimateETASBranchingC(double *ts, double *marks, int *branching, int *n, double *maxTime, double *M0, int *sims, int *numMCMCSamples, double *mu, double *K, double *alpha, double *c, double *p, double *c_lower, double *mus, double *Ks, double *alphas, double *cs, double *ps, int *cp_accept, int *cp_total, int *kappa_accept, int *kappa_total) {
      |              ^
etas.cpp:602:14: note: ‘estimateETASBranchingC’ was previously declared here
init.c:10:13: warning: type of ‘ETASspatiallikelihoodC’ does not match original declaration [-Wlto-type-mismatch]
   10 | extern void ETASspatiallikelihoodC(void);
      |             ^
etas.cpp:765:14: note: type mismatch in parameter 1
  765 |         void ETASspatiallikelihoodC(double *ts, double *marks, double *xs, double *ys, int *n, double *maxTime, double *M0, double *area, double *mu, double *K, double *alpha, double *c, double *p, double *param1, double *param2, double *loglik) {
      |              ^
etas.cpp:765:14: note: ‘ETASspatiallikelihoodC’ was previously declared here
init.c:9:13: warning: type of ‘ETASlikelihoodC’ does not match original declaration [-Wlto-type-mismatch]
    9 | extern void ETASlikelihoodC(void);
      |             ^
etas.cpp:757:14: note: type mismatch in parameter 1
  757 |         void ETASlikelihoodC(double *ts, double *marks, int *n, double *maxTime, double *M0, double *mu, double *K, double *alpha, double *c, double *p, double *loglik) {
      |              ^
etas.cpp:757:14: note: ‘ETASlikelihoodC’ was previously declared here
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-LTO/bayesianETAS/src'
installing to /data/gannet/ripley/R/packages/tests-LTO/Libs/bayesianETAS-lib/00LOCK-bayesianETAS/00new/bayesianETAS/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bayesianETAS)
Time 0:18.52, 10.76 + 0.97