* installing *source* package ‘FORTLS’ ...
** this is package ‘FORTLS’ version ‘1.6.1’
** package ‘FORTLS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-LTO/FORTLS/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c geometric_features_dist.cpp -o geometric_features_dist.o
geometric_features_dist.cpp:419: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  419 | #pragma omp parallel if(n_points > 100)
geometric_features_dist.cpp:427: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
  427 | #pragma omp for schedule(dynamic, 64)
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c geometric_features_knn.cpp -o geometric_features_knn.o
geometric_features_knn.cpp:340: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  340 | #pragma omp parallel if(n_points > 100)
geometric_features_knn.cpp:348: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
  348 | #pragma omp for schedule(dynamic, 32)
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c ransac_and_util.cpp -o ransac_and_util.o
ransac_and_util.cpp: In function ‘arma::mat iterations_RANSAC(arma::mat, int)’:
ransac_and_util.cpp:209:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  209 |   for (unsigned int i = 0; i < n_iterations; i++) {
      |                            ~~^~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -flto=10  -c simulations.cpp -o simulations.o
simulations.cpp: In function ‘std::vector<double> order_cpp(std::vector<double>, std::vector<double>)’:
simulations.cpp:253:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<double, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  253 |   for (int i = 0; i < target.size(); i++){
      |                   ~~^~~~~~~~~~~~~~~
simulations.cpp: In function ‘Rcpp::DataFrame fixed_area_cpp(std::vector<double>, std::vector<double>, std::vector<double>, std::vector<double>, double)’:
simulations.cpp:316:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  316 |     for(int j = 0; j < factor.size(); j++){
      |                    ~~^~~~~~~~~~~~~~~
simulations.cpp: In function ‘Rcpp::DataFrame k_tree_cpp(std::vector<double>, std::vector<double>, std::vector<double>, std::vector<double>, std::vector<double>, double)’:
simulations.cpp:412:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  412 |     for(int j = 0; j < factor.size(); j++){
      |                    ~~^~~~~~~~~~~~~~~
simulations.cpp: In function ‘Rcpp::DataFrame angle_count_cpp(std::vector<double>, std::vector<double>, std::vector<double>, std::vector<double>, double)’:
simulations.cpp:505:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  505 |     for(int q = 0; q < factor.size(); q++){
      |                    ~~^~~~~~~~~~~~~~~
simulations.cpp:520:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  520 |     for(int j = 0; j < factor.size(); j++){
      |                    ~~^~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o FORTLS.so RcppExports.o geometric_features_dist.o geometric_features_knn.o ransac_and_util.o simulations.o
geometric_features_dist.cpp:146:8: warning: type ‘struct GeometricFeatures’ violates the C++ One Definition Rule [-Wodr]
  146 | struct GeometricFeatures {
      |        ^
geometric_features_knn.cpp:72:8: note: a different type is defined in another translation unit
   72 | struct GeometricFeatures {
      |        ^
geometric_features_dist.cpp:154:20: note: the first difference of corresponding definitions is field ‘surface_density’
  154 |   double n_points, surface_density, volume_density;
      |                    ^
geometric_features_knn.cpp:72:8: note: a type with different number of fields is defined in another translation unit
   72 | struct GeometricFeatures {
      |        ^
geometric_features_knn.cpp:82:3: warning: type of ‘__ct_comp ’ does not match original declaration [-Wlto-type-mismatch]
   82 |   GeometricFeatures() :
      |   ^
geometric_features_dist.cpp:157:3: note: ‘__ct_comp ’ was previously declared here
  157 |   GeometricFeatures() :
      |   ^
geometric_features_dist.cpp:157:3: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used
geometric_features_knn.cpp:82:3: warning: type of ‘__ct_base ’ does not match original declaration [-Wlto-type-mismatch]
   82 |   GeometricFeatures() :
      |   ^
geometric_features_dist.cpp:157:3: note: ‘__ct_base ’ was previously declared here
  157 |   GeometricFeatures() :
      |   ^
geometric_features_dist.cpp:157:3: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-LTO/FORTLS/src'
installing to /data/gannet/ripley/R/packages/tests-LTO/Libs/FORTLS-lib/00LOCK-FORTLS/00new/FORTLS/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FORTLS)
Time 3:41.80, 101.81 + 7.42