* installing *source* package ‘CorReg’ ... ** package ‘CorReg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-LTO/CorReg/src' g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c BICZsparse.cpp -o BICZsparse.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c BICZsparse2_cpp.cpp -o BICZsparse2_cpp.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c BICZsparse_cpp.cpp -o BICZsparse_cpp.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c BICZsparse_j_cpp.cpp -o BICZsparse_j_cpp.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c BicLoc_cpp.cpp -o BicLoc_cpp.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c BicTheta.cpp -o BicTheta.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c BicZ.cpp -o BicZ.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c BicZ_cpp.cpp -o BicZ_cpp.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c BicZ_cpp2.cpp -o BicZ_cpp2.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c BicZ_j_cpp.cpp -o BicZ_j_cpp.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c BicZmissRcpp.cpp -o BicZmissRcpp.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c CVMSE.cpp -o CVMSE.o gcc -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -flto -c CorReg_init.c -o CorReg_init.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c GM_likelihood.cpp -o GM_likelihood.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c OLS.cpp -o OLS.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c OLS_cpp.cpp -o OLS_cpp.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c ProbaZ_cpp.cpp -o ProbaZ_cpp.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c cleanZ.cpp -o cleanZ.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c cleancolZ.cpp -o cleancolZ.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c kronecker_prod_cpp.cpp -o kronecker_prod_cpp.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c kronecker_sum_cpp.cpp -o kronecker_sum_cpp.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c modsparse_cpp.cpp -o modsparse_cpp.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c rechercheZ.cpp -o rechercheZ.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c rechercheZ_rejet.cpp -o rechercheZ_rejet.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c rechercheZ_relax.cpp -o rechercheZ_relax.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c rechercheZ_sparse_rejet.cpp -o rechercheZ_sparse_rejet.o g++ -std=gnu++11 -I"/data/gannet/ripley/R/LTO/include" -DNDEBUG -I'/data/gannet/ripley/R/test-4.1/Rcpp/include' -I'/data/gannet/ripley/R/test-4.1/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -c rechercheZ_sparse_relax.cpp -o rechercheZ_sparse_relax.o g++ -std=gnu++11 -shared -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-parentheses -flto -fpic -L/usr/local/lib64 -o CorReg.so BICZsparse.o BICZsparse2_cpp.o BICZsparse_cpp.o BICZsparse_j_cpp.o BicLoc_cpp.o BicTheta.o BicZ.o BicZ_cpp.o BicZ_cpp2.o BicZ_j_cpp.o BicZmissRcpp.o CVMSE.o CorReg_init.o GM_likelihood.o OLS.o OLS_cpp.o ProbaZ_cpp.o cleanZ.o cleancolZ.o kronecker_prod_cpp.o kronecker_sum_cpp.o modsparse_cpp.o rechercheZ.o rechercheZ_rejet.o rechercheZ_relax.o rechercheZ_sparse_rejet.o rechercheZ_sparse_relax.o CorReg_init.c:11:13: warning: type of ‘BicLoc_cpp’ does not match original declaration [-Wlto-type-mismatch] 11 | extern SEXP BicLoc_cpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP); | ^ BicLoc_cpp.cpp:13:8: note: return value type mismatch 13 | double BicLoc_cpp(const Eigen::MatrixXd &X,const Eigen::MatrixXd &Y,const bool &intercept,const int &methode){ | ^ BicLoc_cpp.cpp:13:8: note: type ‘double’ should match type ‘struct SEXPREC *’ BicLoc_cpp.cpp:13:8: note: ‘BicLoc_cpp’ was previously declared here BicLoc_cpp.cpp:13:8: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-LTO/CorReg/src' installing to /data/gannet/ripley/R/packages/tests-LTO/Libs/CorReg-lib/00LOCK-CorReg/00new/CorReg/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CorReg) Time 7:30.93, 382.01 + 24.08