* installing *source* package ‘CCMnet’ ... ** this is package ‘CCMnet’ version ‘0.1.4’ ** package ‘CCMnet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-LTO/CCMnet/src' gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c CCMnet_netprop_degdist.c -o CCMnet_netprop_degdist.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c CCMnet_netprop_degmixing.c -o CCMnet_netprop_degmixing.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c CCMnet_netprop_degmixing_clustering.c -o CCMnet_netprop_degmixing_clustering.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c CCMnet_netprop_edges.c -o CCMnet_netprop_edges.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c CCMnet_netprop_mixing.c -o CCMnet_netprop_mixing.o CCMnet_netprop_mixing.c: In function ‘calc_f_mixing’: CCMnet_netprop_mixing.c:83:7: warning: unused variable ‘k’ [-Wunused-variable] 83 | int k = (int)((sqrt(8.0 * num_params + 1.0) - 1.0) / 2.0 + 0.1); | ^ CCMnet_netprop_mixing.c:72:16: warning: unused variable ‘Cov_type’ [-Wunused-variable] 72 | int counter, Cov_type; | ^~~~~~~~ CCMnet_netprop_mixing.c:72:7: warning: unused variable ‘counter’ [-Wunused-variable] 72 | int counter, Cov_type; | ^~~~~~~ CCMnet_netprop_mixing.c: In function ‘calc_probs_mixing’: CCMnet_netprop_mixing.c:148:16: warning: unused variable ‘Cov_type’ [-Wunused-variable] 148 | int counter, Cov_type; | ^~~~~~~~ CCMnet_netprop_mixing.c:148:7: warning: unused variable ‘counter’ [-Wunused-variable] 148 | int counter, Cov_type; | ^~~~~~~ gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c CCMnet_netprop_mixing_degdist.c -o CCMnet_netprop_mixing_degdist.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c MCMC.c -o MCMC.o In file included from MCMC.c:13: MCMC_prob.h: In function ‘MetropolisHastings’: MCMC_prob.h:892:18: warning: unused variable ‘num_Tri_change’ [-Wunused-variable] 892 | double num_Tri_change = fabs(m->workspace[m->n_stats-1]); //should be last statistic | ^~~~~~~~~~~~~~ MCMC_prob.h:891:18: warning: unused variable ‘num_Tri’ [-Wunused-variable] 891 | double num_Tri = networkstatistics[m->n_stats-1]; //should be last statistic | ^~~~~~~ MCMC_prob.h:142:10: warning: unused variable ‘MHp_density’ [-Wunused-variable] 142 | double MHp_density; | ^~~~~~~~~~~ MCMC_prob.h:141:10: warning: unused variable ‘nwp_density’ [-Wunused-variable] 141 | double nwp_density; | ^~~~~~~~~~~ MCMC_prob.h:139:7: warning: unused variable ‘counter2’ [-Wunused-variable] 139 | int counter2; | ^~~~~~~~ MCMC_prob.h:138:7: warning: unused variable ‘counter1’ [-Wunused-variable] 138 | int counter1; | ^~~~~~~~ gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c MHproposal.c -o MHproposal.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c MHproposals.c -o MHproposals.o MHproposals.c: In function ‘MH_OneRandomTnTNode’: MHproposals.c:1041:36: warning: variable ‘ndyad’ set but not used [-Wunused-but-set-variable] 1041 | int noutedge=0, ninedge=0, k0=0, ndyad, fvalid=0, k; | ^~~~~ gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c MHproposals_bipartite.c -o MHproposals_bipartite.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c changestat.c -o changestat.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c changestats.c -o changestats.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c edgelist.c -o edgelist.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c edgetree.c -o edgetree.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c init.c -o init.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -c model.c -o model.o gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -flto=10 -fpic -L/usr/local/lib64 -o CCMnet.so CCMnet_netprop_degdist.o CCMnet_netprop_degmixing.o CCMnet_netprop_degmixing_clustering.o CCMnet_netprop_edges.o CCMnet_netprop_mixing.o CCMnet_netprop_mixing_degdist.o MCMC.o MHproposal.o MHproposals.o MHproposals_bipartite.o changestat.o changestats.o edgelist.o edgetree.o init.o model.o init.c:6:13: warning: type of ‘MCMC_wrapper’ does not match original declaration [-Wlto-type-mismatch] 6 | extern void MCMC_wrapper(int*, int*, int*, int*, int*, int*, int*, int*, char**, | ^ MCMC.c:29:6: note: type mismatch in parameter 11 29 | void MCMC_wrapper(int *dnumnets, int *nedges, | ^ MCMC.c:29:6: note: ‘MCMC_wrapper’ was previously declared here make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-LTO/CCMnet/src' installing to /data/gannet/ripley/R/packages/tests-LTO/Libs/CCMnet-lib/00LOCK-CCMnet/00new/CCMnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CCMnet) Time 1:45.30, 61.90 + 3.89