* using log directory ‘/data/gannet/ripley/R/packages/tests-LENGTH1/mlr3proba.Rcheck’
* using R Under development (unstable) (2022-04-25 r82252)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘mlr3proba/DESCRIPTION’ ... OK
* this is package ‘mlr3proba’ version ‘0.4.9’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mlr3proba’ can be installed ... [70s/365s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [92s/445s] OK
* checking Rd files ... [3s/12s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [8s/27s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [96s/303s]
 [96s/305s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > if (requireNamespace("testthat", quietly = TRUE)) {
  +   library("testthat")
  +   library("checkmate") # for more expect_*() functions
  +   library("mlr3proba")
  +   test_check("mlr3proba")
  + }
  Loading required package: mlr3
   ----------- FAILURE REPORT -------------- 
   --- failure: length > 1 in coercion to logical ---
   --- srcref --- 
  : 
   --- package (from environment) --- 
  distr6
   --- call from context --- 
  .merge_matpdf_cols(lapply(mds, gprm, "pdf"))
   --- call from argument --- 
  nc == 1 && length(cnms) == nc
   --- R stacktrace ---
  where 1: .merge_matpdf_cols(lapply(mds, gprm, "pdf"))
  where 2: distr6::mixMatrix(distr)
  where 3: .__PipeOpSurvAvg__weighted_avg_predictions(self = self, private = private, 
      super = super, inputs = inputs, weights = weights, row_ids = row_ids, 
      truth = truth)
  where 4: private$weighted_avg_predictions(inputs, weights, row_ids, truth)
  where 5: .__PipeOpEnsemble__.predict(self = self, private = private, super = super, 
      inputs = inputs)
  where 6: private$.predict(input)
  where 7: withCallingHandlers({
      output = private$.predict(input)
  }, error = function(e) {
      e$message = sprintf("%s\nThis happened PipeOp %s's $predict()", 
          e$message, self$id)
      stop(e)
  }, warning = function(w) {
      w$message = sprintf("%s\nThis happened PipeOp %s's $predict()", 
          w$message, self$id)
      warning(w)
      invokeRestart("muffleWarning")
  })
  where 8: .__PipeOp__predict(self = self, private = private, super = super, 
      input = input)
  where 9: op[[fun]](input)
  where 10: graph_reduce(self, input, "predict", single_input)
  where 11: .__Graph__predict(self = self, private = private, super = super, 
      input = input, single_input = single_input)
  where 12: self$graph$predict(task)
  where 13: .__GraphLearner__.predict(self = self, private = private, super = super, 
      task = task)
  where 14: get_private(learner)$.predict(task)
  where 15: .f(task = <environment>, learner = <environment>)
  where 16: eval(expr, p)
  where 17: eval(expr, p)
  where 18: eval.parent(expr, n = 1L)
  where 19: invoke(.f, .args = .args, .opts = .opts, .seed = .seed, .timeout = .timeout)
  where 20: encapsulate(learner$encapsulate["predict"], .f = predict_wrapper, 
      .args = list(task = task, learner = learner), .pkgs = learner$packages, 
      .seed = NA_integer_, .timeout = learner$timeout["predict"])
  where 21: learner_predict(self, task, row_ids)
  where 22: .__Learner__predict(self = self, private = private, super = super, 
      task = task, row_ids = row_ids)
  where 23 at test_pipelines.R#46: pipe$predict(task)
  where 24: eval(code, test_env)
  where 25: eval(code, test_env)
  where 26: withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error)
  where 27: doTryCatch(return(expr), name, parentenv, handler)
  where 28: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  where 29: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  where 30: doTryCatch(return(expr), name, parentenv, handler)
  where 31: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), 
      names[nh], parentenv, handlers[[nh]])
  where 32: tryCatchList(expr, classes, parentenv, handlers)
  where 33: tryCatch(withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error), error = handle_fatal, 
      skip = function(e) {
      })
  where 34: test_code(desc, code, env = parent.frame(), reporter = reporter)
  where 35 at test_pipelines.R#40: test_that("survbagging", {
      pipe = mlr3pipelines::ppl("survbagging", lrn("surv.kaplan"), 
          iterations = 2)
      expect_class(pipe, "Graph")
      pipe = mlr3pipelines::ppl("survbagging", lrn("surv.kaplan"), 
          iterations = 2, graph_learner = TRUE)
      expect_class(pipe, "GraphLearner")
      pipe$train(task)
      p = pipe$predict(task)
      expect_prediction_surv(p)
  })
  where 36: eval(code, test_env)
  where 37: eval(code, test_env)
  where 38: withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error)
  where 39: doTryCatch(return(expr), name, parentenv, handler)
  where 40: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  where 41: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  where 42: doTryCatch(return(expr), name, parentenv, handler)
  where 43: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), 
      names[nh], parentenv, handlers[[nh]])
  where 44: tryCatchList(expr, classes, parentenv, handlers)
  where 45: tryCatch(withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error), error = handle_fatal, 
      skip = function(e) {
      })
  where 46: test_code(NULL, exprs, env)
  where 47: source_file(path, child_env(env), wrap = wrap)
  where 48: FUN(X[[i]], ...)
  where 49: lapply(test_paths, test_one_file, env = env, wrap = wrap)
  where 50: doTryCatch(return(expr), name, parentenv, handler)
  where 51: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  where 52: tryCatchList(expr, classes, parentenv, handlers)
  where 53: tryCatch(code, testthat_abort_reporter = function(cnd) {
      cat(conditionMessage(cnd), "\n")
      NULL
  })
  where 54: with_reporter(reporters$multi, lapply(test_paths, test_one_file, 
      env = env, wrap = wrap))
  where 55: test_files(test_dir = test_dir, test_package = test_package, 
      test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, 
      env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, 
      wrap = wrap, load_package = load_package)
  where 56: test_files(test_dir = path, test_paths = test_paths, test_package = package, 
      reporter = reporter, load_helpers = load_helpers, env = env, 
      stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, 
      wrap = wrap, load_package = load_package, parallel = parallel)
  where 57: test_dir("testthat", package = package, reporter = reporter, 
      ..., load_package = "installed")
  where 58: test_check("mlr3proba")
  
   --- value of length: 2 type: logical ---
  [1] FALSE FALSE
   --- function from context --- 
  function (pdfs) 
  {
      nc <- unique(viapply(pdfs, ncol))
      cnms <- sort(unique(as.numeric(unlist(lapply(pdfs, colnames)))))
      if (nc == 1 && length(cnms) == nc) {
          return(pdfs)
      }
      nc <- length(cnms)
      lapply(pdfs, function(.x) {
          out <- matrix(0, nrow(.x), nc, FALSE, list(NULL, cnms))
          out[, match(as.numeric(colnames(.x)), cnms)] <- .x
          out
      })
  }
  <bytecode: 0x14c6c2c8>
  <environment: namespace:distr6>
   --- function search by body ---
  Function .merge_matpdf_cols in namespace distr6 has this body.
   ----------- END OF FAILURE REPORT -------------- 
  Fatal error: length > 1 in coercion to logical
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-LENGTH1/mlr3proba.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 28:51.73, 377.02 + 24.36