* using log directory ‘/data/gannet/ripley/R/packages/tests-Intel/rubias.Rcheck’ * using R Under development (unstable) (2024-04-23 r86471) * using platform: x86_64-pc-linux-gnu * R was compiled by Intel(R) oneAPI DPC++/C++ Compiler 2024.1.0 (2024.1.0.20240308) ifx (IFX) 2024.1.0 20240308 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘rubias/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘rubias’ version ‘0.3.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rubias’ can be installed ... [133s/123s] OK * used C++ compiler: ‘Intel(R) oneAPI DPC++/C++ Compiler 2024.1.0 (2024.1.0.20240308)’ * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [20s/33s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements. * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [18s/31s] ERROR Running examples in ‘rubias-Ex.R’ failed The error most likely occurred in: > ### Name: write_gsi_sim_reference > ### Title: Write a reference data frame to gsi_sim format baseline and > ### repunits file > ### Aliases: write_gsi_sim_reference > > ### ** Examples > > # create a temp directory to put example outputs > dd <- tempdir() > basefile <- file.path(dd, "baseline.txt") > repunitsfile <- file.path(dd, "repunits.txt") > > # print those > basefile [1] "/tmp/RtmpcIiSoJ/working_dir/RtmpUnJl78/baseline.txt" > repunitsfile [1] "/tmp/RtmpcIiSoJ/working_dir/RtmpUnJl78/repunits.txt" > > # note that in practice you will probably want to specify > # your own filepaths... > > # run the function > write_gsi_sim_reference(alewife, 17, basefile, repunitsfile) > > > > ### *