* using log directory ‘/data/gannet/ripley/R/packages/tests-Intel/popsom.Rcheck’ * using R Under development (unstable) (2023-09-07 r85101) * using platform: x86_64-pc-linux-gnu * R was compiled by Intel(R) oneAPI DPC++/C++ Compiler 2023.2.0 (2023.2.0.20230721) ifx (IFX) 2023.2.0 20230721 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘popsom/DESCRIPTION’ ... OK * this is package ‘popsom’ version ‘6.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘popsom’ can be installed ... [16s/36s] OK * used C compiler: ‘Intel(R) oneAPI DPC++/C++ Compiler 2023.2.0 (2023.2.0.20230721)’ * used Fortran compiler: ‘ifx (IFX) 2023.2.0 20230721’ * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... [3s/10s] OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [22s/49s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... NOTE File ‘popsom/libs/popsom.so’: Found ‘for_random_number_single’, possibly from ‘random_number’ (Fortran) Object: ‘vsom.o’ Found ‘for_random_seed_bit_size’, possibly from ‘random_seed’ (Fortran) Object: ‘vsom.o’ Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs nor [v]sprintf. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. * checking examples ... [23s/47s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [22s/46s] [23s/47s] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(popsom) > > test_check("popsom") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 11 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-predict.R:12:3'): map.predict function works ───────────────── p[56, 1] (`actual`) not equal to "versicolor" (`expected`). `actual`: "virginica" `expected`: "versicolor" [ FAIL 1 | WARN 0 | SKIP 0 | PASS 11 ] Error: Test failures Execution halted * checking PDF version of manual ... [7s/18s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-Intel/popsom.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 6:46.65, 136.76 + 13.03