* using log directory ‘/data/gannet/ripley/R/packages/tests-Intel/ipsecr.Rcheck’
* using R Under development (unstable) (2024-06-24 r86824)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Intel(R) oneAPI DPC++/C++ Compiler 2024.2.0 (2024.2.0.20240602)
    ifx (IFX) 2024.2.0 20240602
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘ipsecr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ipsecr’ version ‘1.4.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ipsecr’ can be installed ... [3m/11m] WARNING
Found the following significant warnings:
  /usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_tempbuf.h:263:8: warning: 'get_temporary_buffer<arma::arma_sort_index_packet<double>>' is deprecated [-Wdeprecated-declarations]
See ‘/data/gannet/ripley/R/packages/tests-Intel/ipsecr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Intel(R) oneAPI DPC++/C++ Compiler 2024.2.0 (2024.2.0.20240602)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [20s/68s] OK
* checking whether the package can be loaded with stated dependencies ... [20s/151s] OK
* checking whether the package can be unloaded cleanly ... [20s/92s] OK
* checking whether the namespace can be loaded with stated dependencies ... [20s/81s] OK
* checking whether the namespace can be unloaded cleanly ... [21s/102s] OK
* checking loading without being on the library search path ... [20s/78s] OK
* checking whether startup messages can be suppressed ... [21s/124s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2m/12m] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [20s/58s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [24s/107s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [80s/251s]
 [81s/252s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [66s/285s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘ipsecr-vignette.Rmd’ using rmarkdown
--- finished re-building ‘ipsecr-vignette.Rmd’


 *** caught segfault ***
address (nil), cause 'unknown'
An irrecoverable exception occurred. R is aborting now ...

* checking PDF version of manual ... [9s/31s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 1 WARNING
See
  ‘/data/gannet/ripley/R/packages/tests-Intel/ipsecr.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:10:30, 832.93 + 58.52