* installing *source* package ‘gbm’ ... ** package ‘gbm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Intel(R) oneAPI DPC++/C++ Compiler 2024.2.0 (2024.2.0.20240602)’ using C++ compiler: ‘Intel(R) oneAPI DPC++/C++ Compiler 2024.2.0 (2024.2.0.20240602)’ make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-Intel/gbm/src' /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c adaboost.cpp -o adaboost.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c bernoulli.cpp -o bernoulli.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c coxph.cpp -o coxph.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c dataset.cpp -o dataset.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c distribution.cpp -o distribution.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c gaussian.cpp -o gaussian.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icx -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -Wstrict-prototypes -c gbm-init.c -o gbm-init.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c gbm.cpp -o gbm.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c gbm_engine.cpp -o gbm_engine.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c gbmentry.cpp -o gbmentry.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c huberized.cpp -o huberized.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c laplace.cpp -o laplace.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c locationm.cpp -o locationm.o In file included from locationm.cpp:13: In file included from ./locationm.h:14: In file included from /usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/algorithm:61: In file included from /usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_algo.h:61: /usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_tempbuf.h:263:8: warning: 'get_temporary_buffer>' is deprecated [-Wdeprecated-declarations] 263 | std::get_temporary_buffer(_M_original_len)); | ^ /usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_algo.h:4996:15: note: in instantiation of member function 'std::_Temporary_buffer<__gnu_cxx::__normal_iterator *, std::vector>>, std::pair>::_Temporary_buffer' requested here 4996 | _TmpBuf __buf(__first, (__last - __first + 1) / 2); | ^ /usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_algo.h:5070:23: note: in instantiation of function template specialization 'std::__stable_sort<__gnu_cxx::__normal_iterator *, std::vector>>, __gnu_cxx::__ops::_Iter_comp_iter>' requested here 5070 | _GLIBCXX_STD_A::__stable_sort(__first, __last, | ^ locationm.cpp:88:7: note: in instantiation of function template specialization 'std::stable_sort<__gnu_cxx::__normal_iterator *, std::vector>>, CLocationM::comp>' requested here 88 | std::stable_sort(vecV.begin(), vecV.end(), comp()); | ^ /usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_tempbuf.h:99:5: note: 'get_temporary_buffer>' has been explicitly marked deprecated here 99 | _GLIBCXX17_DEPRECATED | ^ /usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/x86_64-redhat-linux/bits/c++config.h:2359:34: note: expanded from macro '_GLIBCXX17_DEPRECATED' 2359 | # define _GLIBCXX17_DEPRECATED [[__deprecated__]] | ^ 1 warning generated. /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c multinomial.cpp -o multinomial.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c node.cpp -o node.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c node_categorical.cpp -o node_categorical.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c node_continuous.cpp -o node_continuous.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c node_factory.cpp -o node_factory.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c node_nonterminal.cpp -o node_nonterminal.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c node_search.cpp -o node_search.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c node_terminal.cpp -o node_terminal.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c pairwise.cpp -o pairwise.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c poisson.cpp -o poisson.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c quantile.cpp -o quantile.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c tdist.cpp -o tdist.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG -I/usr/local/include -fpic -O3 -fp-model precise -Wall -c tree.cpp -o tree.o /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -shared -L/data/gannet/ripley/intel/oneapi/compiler/2024.1/lib -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o gbm.so adaboost.o bernoulli.o coxph.o dataset.o distribution.o gaussian.o gbm-init.o gbm.o gbm_engine.o gbmentry.o huberized.o laplace.o locationm.o multinomial.o node.o node_categorical.o node_continuous.o node_factory.o node_nonterminal.o node_search.o node_terminal.o pairwise.o poisson.o quantile.o tdist.o tree.o make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-Intel/gbm/src' make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-Intel/gbm/src' make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-Intel/gbm/src' installing to /data/gannet/ripley/R/packages/tests-Intel/gbm.Rcheck/00LOCK-gbm/00new/gbm/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gbm)