* installing *source* package ‘BayesSUR’ ...
** package ‘BayesSUR’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 accepts -g... no
checking for /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 option to enable C++11 features... none needed
checking whether CXX supports -std=c++17... yes
checking for /data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 option to support OpenMP... -fopenmp
checking whether OpenMP will actually work in a package... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘Intel(R) oneAPI DPC++/C++ Compiler 2024.2.0 (2024.2.0.20240602)’
using C++17
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-Intel/BayesSUR/src'
/data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG  -I'/data/gannet2/ripley/R/test-MKL/Rcpp/include' -I'/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -O3 -fp-model precise -Wall   -c BayesSUR.cpp -o BayesSUR.o
icpx: warning: Use of '-qopenmp' recommended over '-fopenmp' [-Wrecommended-option]
/data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG  -I'/data/gannet2/ripley/R/test-MKL/Rcpp/include' -I'/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -O3 -fp-model precise -Wall   -c HRR_Chain.cpp -o HRR_Chain.o
icpx: warning: Use of '-qopenmp' recommended over '-fopenmp' [-Wrecommended-option]
/data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG  -I'/data/gannet2/ripley/R/test-MKL/Rcpp/include' -I'/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -O3 -fp-model precise -Wall   -c RcppExports.cpp -o RcppExports.o
icpx: warning: Use of '-qopenmp' recommended over '-fopenmp' [-Wrecommended-option]
/data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG  -I'/data/gannet2/ripley/R/test-MKL/Rcpp/include' -I'/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -O3 -fp-model precise -Wall   -c SUR_Chain.cpp -o SUR_Chain.o
icpx: warning: Use of '-qopenmp' recommended over '-fopenmp' [-Wrecommended-option]
/data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG  -I'/data/gannet2/ripley/R/test-MKL/Rcpp/include' -I'/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -O3 -fp-model precise -Wall   -c distr.cpp -o distr.o
icpx: warning: Use of '-qopenmp' recommended over '-fopenmp' [-Wrecommended-option]
In file included from HRR_Chain.cpp:1:
In file included from ./HRR_Chain.h:6:
In file included from /usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/memory:67:
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_tempbuf.h:263:8: warning: 'get_temporary_buffer<arma::arma_sort_index_packet<double>>' is deprecated [-Wdeprecated-declarations]
  263 |                 std::get_temporary_buffer<value_type>(_M_original_len));
      |                      ^
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_algo.h:4996:15: note: in instantiation of member function 'std::_Temporary_buffer<__gnu_cxx::__normal_iterator<arma::arma_sort_index_packet<double> *, std::vector<arma::arma_sort_index_packet<double>>>, arma::arma_sort_index_packet<double>>::_Temporary_buffer' requested here
 4996 |       _TmpBuf __buf(__first, (__last - __first + 1) / 2);
      |               ^
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_algo.h:5070:23: note: in instantiation of function template specialization 'std::__stable_sort<__gnu_cxx::__normal_iterator<arma::arma_sort_index_packet<double> *, std::vector<arma::arma_sort_index_packet<double>>>, __gnu_cxx::__ops::_Iter_comp_iter<arma::arma_sort_index_helper_ascend<double>>>' requested here
 5070 |       _GLIBCXX_STD_A::__stable_sort(__first, __last,
      |                       ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_sort_index_meat.hpp:85:12: note: in instantiation of function template specialization 'std::stable_sort<__gnu_cxx::__normal_iterator<arma::arma_sort_index_packet<double> *, std::vector<arma::arma_sort_index_packet<double>>>, arma::arma_sort_index_helper_ascend<double>>' requested here
   85 |       std::stable_sort( packet_vec.begin(), packet_vec.end(), comparator );
      |            ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_sort_index_meat.hpp:123:10: note: in instantiation of function template specialization 'arma::arma_sort_index_helper<arma::Col<double>, false>' requested here
  123 |   return arma_sort_index_helper<T1,false>(out, P, sort_type);
      |          ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_sort_index_meat.hpp:147:34: note: in instantiation of function template specialization 'arma::op_sort_index::apply_noalias<arma::Col<double>>' requested here
  147 |     all_non_nan = op_sort_index::apply_noalias(out2, P, sort_type);
      |                                  ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:5234:12: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
 5234 |   op_type::apply(*this, X);
      |            ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_inv_spd_meat.hpp:141:23: note: in instantiation of function template specialization 'arma::op_pinv::apply_sym<double>' requested here
  141 |       return op_pinv::apply_sym(out, A, T(0), uword(0));
      |                       ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_inv_spd_meat.hpp:49:27: note: in instantiation of function template specialization 'arma::op_inv_spd_full::apply_direct<arma::Mat<double>, false>' requested here
   49 |   return op_inv_spd_full::apply_direct<T1,false>(out, expr, uword(0));
      |                           ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_inv_spd_meat.hpp:31:43: note: in instantiation of function template specialization 'arma::op_inv_spd_default::apply_direct<arma::Mat<double>>' requested here
   31 |   const bool status = op_inv_spd_default::apply_direct(out, X.m);
      |                                           ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:4961:12: note: in instantiation of function template specialization 'arma::op_inv_spd_default::apply<arma::Mat<double>>' requested here
 4961 |   op_type::apply(*this, X);
      |            ^
HRR_Chain.cpp:555:17: note: in instantiation of function template specialization 'arma::Mat<double>::operator=<arma::Mat<double>, arma::op_inv_spd_default>' requested here
  555 |             W_k = arma::inv_sympd( W_k ); // might add settings argument arma::inv_sympd( W_k, inv_opts::allow_approx )
      |                 ^
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_tempbuf.h:99:5: note: 'get_temporary_buffer<arma::arma_sort_index_packet<double>>' has been explicitly marked deprecated here
   99 |     _GLIBCXX17_DEPRECATED
      |     ^
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/x86_64-redhat-linux/bits/c++config.h:2359:34: note: expanded from macro '_GLIBCXX17_DEPRECATED'
 2359 | # define _GLIBCXX17_DEPRECATED [[__deprecated__]]
      |                                  ^
/data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG  -I'/data/gannet2/ripley/R/test-MKL/Rcpp/include' -I'/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -O3 -fp-model precise -Wall   -c drive.cpp -o drive.o
icpx: warning: Use of '-qopenmp' recommended over '-fopenmp' [-Wrecommended-option]
In file included from SUR_Chain.cpp:1:
In file included from ./SUR_Chain.h:6:
In file included from /usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/memory:67:
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_tempbuf.h:263:8: warning: 'get_temporary_buffer<arma::arma_sort_index_packet<double>>' is deprecated [-Wdeprecated-declarations]
  263 |                 std::get_temporary_buffer<value_type>(_M_original_len));
      |                      ^
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_algo.h:4996:15: note: in instantiation of member function 'std::_Temporary_buffer<__gnu_cxx::__normal_iterator<arma::arma_sort_index_packet<double> *, std::vector<arma::arma_sort_index_packet<double>>>, arma::arma_sort_index_packet<double>>::_Temporary_buffer' requested here
 4996 |       _TmpBuf __buf(__first, (__last - __first + 1) / 2);
      |               ^
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_algo.h:5070:23: note: in instantiation of function template specialization 'std::__stable_sort<__gnu_cxx::__normal_iterator<arma::arma_sort_index_packet<double> *, std::vector<arma::arma_sort_index_packet<double>>>, __gnu_cxx::__ops::_Iter_comp_iter<arma::arma_sort_index_helper_ascend<double>>>' requested here
 5070 |       _GLIBCXX_STD_A::__stable_sort(__first, __last,
      |                       ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_sort_index_meat.hpp:85:12: note: in instantiation of function template specialization 'std::stable_sort<__gnu_cxx::__normal_iterator<arma::arma_sort_index_packet<double> *, std::vector<arma::arma_sort_index_packet<double>>>, arma::arma_sort_index_helper_ascend<double>>' requested here
   85 |       std::stable_sort( packet_vec.begin(), packet_vec.end(), comparator );
      |            ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_sort_index_meat.hpp:123:10: note: in instantiation of function template specialization 'arma::arma_sort_index_helper<arma::Col<double>, false>' requested here
  123 |   return arma_sort_index_helper<T1,false>(out, P, sort_type);
      |          ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_sort_index_meat.hpp:147:34: note: in instantiation of function template specialization 'arma::op_sort_index::apply_noalias<arma::Col<double>>' requested here
  147 |     all_non_nan = op_sort_index::apply_noalias(out2, P, sort_type);
      |                                  ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:5234:12: note: (skipping 3 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
 5234 |   op_type::apply(*this, X);
      |            ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_inv_spd_meat.hpp:141:23: note: in instantiation of function template specialization 'arma::op_pinv::apply_sym<double>' requested here
  141 |       return op_pinv::apply_sym(out, A, T(0), uword(0));
      |                       ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_inv_spd_meat.hpp:49:27: note: in instantiation of function template specialization 'arma::op_inv_spd_full::apply_direct<arma::subview_elem2<double, arma::Mat<unsigned int>, arma::Mat<unsigned int>>, false>' requested here
   49 |   return op_inv_spd_full::apply_direct<T1,false>(out, expr, uword(0));
      |                           ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_inv_spd_meat.hpp:31:43: note: in instantiation of function template specialization 'arma::op_inv_spd_default::apply_direct<arma::subview_elem2<double, arma::Mat<unsigned int>, arma::Mat<unsigned int>>>' requested here
   31 |   const bool status = op_inv_spd_default::apply_direct(out, X.m);
      |                                           ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:4945:12: note: in instantiation of function template specialization 'arma::op_inv_spd_default::apply<arma::subview_elem2<double, arma::Mat<unsigned int>, arma::Mat<unsigned int>>>' requested here
 4945 |   op_type::apply(*this, X);
      |            ^
SUR_Chain.cpp:1373:53: note: in instantiation of function template specialization 'arma::Mat<double>::Mat<arma::subview_elem2<double, arma::Mat<unsigned int>, arma::Mat<unsigned int>>, arma::op_inv_spd_default>' requested here
 1373 |                                                     arma::inv_sympd( XtX(VS_IN_k,VS_IN_k) ) , ( 1./ sigmaRho(k,k) + xtxMultiplier(k) ) );
      |                                                     ^
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_tempbuf.h:99:5: note: 'get_temporary_buffer<arma::arma_sort_index_packet<double>>' has been explicitly marked deprecated here
   99 |     _GLIBCXX17_DEPRECATED
      |     ^
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/x86_64-redhat-linux/bits/c++config.h:2359:34: note: expanded from macro '_GLIBCXX17_DEPRECATED'
 2359 | # define _GLIBCXX17_DEPRECATED [[__deprecated__]]
      |                                  ^
In file included from distr.cpp:1:
In file included from ./global.h:16:
In file included from /data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /data/gannet2/ripley/R/test-MKL/Rcpp/include/RcppCommon.h:62:
In file included from /usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/functional:64:
In file included from /usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_algo.h:61:
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_tempbuf.h:263:8: warning: 'get_temporary_buffer<arma::arma_sort_index_packet<double>>' is deprecated [-Wdeprecated-declarations]
  263 |                 std::get_temporary_buffer<value_type>(_M_original_len));
      |                      ^
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_algo.h:4996:15: note: in instantiation of member function 'std::_Temporary_buffer<__gnu_cxx::__normal_iterator<arma::arma_sort_index_packet<double> *, std::vector<arma::arma_sort_index_packet<double>>>, arma::arma_sort_index_packet<double>>::_Temporary_buffer' requested here
 4996 |       _TmpBuf __buf(__first, (__last - __first + 1) / 2);
      |               ^
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_algo.h:5070:23: note: in instantiation of function template specialization 'std::__stable_sort<__gnu_cxx::__normal_iterator<arma::arma_sort_index_packet<double> *, std::vector<arma::arma_sort_index_packet<double>>>, __gnu_cxx::__ops::_Iter_comp_iter<arma::arma_sort_index_helper_ascend<double>>>' requested here
 5070 |       _GLIBCXX_STD_A::__stable_sort(__first, __last,
      |                       ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_sort_index_meat.hpp:85:12: note: in instantiation of function template specialization 'std::stable_sort<__gnu_cxx::__normal_iterator<arma::arma_sort_index_packet<double> *, std::vector<arma::arma_sort_index_packet<double>>>, arma::arma_sort_index_helper_ascend<double>>' requested here
   85 |       std::stable_sort( packet_vec.begin(), packet_vec.end(), comparator );
      |            ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_sort_index_meat.hpp:123:10: note: in instantiation of function template specialization 'arma::arma_sort_index_helper<arma::Col<double>, false>' requested here
  123 |   return arma_sort_index_helper<T1,false>(out, P, sort_type);
      |          ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/op_sort_index_meat.hpp:147:34: note: in instantiation of function template specialization 'arma::op_sort_index::apply_noalias<arma::Col<double>>' requested here
  147 |     all_non_nan = op_sort_index::apply_noalias(out2, P, sort_type);
      |                                  ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:5221:12: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all)
 5221 |   op_type::apply(*this, X);
      |            ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/unwrap.hpp:1056:7: note: in instantiation of function template specialization 'arma::Mat<unsigned int>::Mat<arma::Col<double>, arma::op_sort_index>' requested here
 1056 |     : M(A)
      |       ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/subview_elem1_meat.hpp:788:32: note: in instantiation of function template specialization 'arma::unwrap_check_mixed<arma::mtOp<unsigned int, arma::Col<double>, arma::op_sort_index>>::unwrap_check_mixed<unsigned int>' requested here
  788 |   const unwrap_check_mixed<T1> tmp1(in.a.get_ref(), actual_out);
      |                                ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:2441:25: note: in instantiation of member function 'arma::subview_elem1<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_sort_index>>::extract' requested here
 2441 |   subview_elem1<eT,T1>::extract(*this, X);
      |                         ^
/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include/armadillo_bits/Col_meat.hpp:522:12: note: in instantiation of function template specialization 'arma::Mat<unsigned int>::operator=<arma::mtOp<unsigned int, arma::Col<double>, arma::op_sort_index>>' requested here
  522 |   Mat<eT>::operator=(X.get_ref());
      |            ^
distr.cpp:354:26: note: in instantiation of function template specialization 'arma::Col<unsigned int>::Col<arma::subview_elem1<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_sort_index>>>' requested here
  354 |             arma::uvec result = population( (arma::sort_index(weights,"ascend")) );
      |                                 ^
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/bits/stl_tempbuf.h:99:5: note: 'get_temporary_buffer<arma::arma_sort_index_packet<double>>' has been explicitly marked deprecated here
   99 |     _GLIBCXX17_DEPRECATED
      |     ^
/usr/lib/gcc/x86_64-redhat-linux/12/../../../../include/c++/12/x86_64-redhat-linux/bits/c++config.h:2359:34: note: expanded from macro '_GLIBCXX17_DEPRECATED'
 2359 | # define _GLIBCXX17_DEPRECATED [[__deprecated__]]
      |                                  ^
/data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG  -I'/data/gannet2/ripley/R/test-MKL/Rcpp/include' -I'/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -O3 -fp-model precise -Wall   -c global.cpp -o global.o
icpx: warning: Use of '-qopenmp' recommended over '-fopenmp' [-Wrecommended-option]
1 warning generated.
1 warning generated.
/data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG  -I'/data/gannet2/ripley/R/test-MKL/Rcpp/include' -I'/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -O3 -fp-model precise -Wall   -c junction_tree.cpp -o junction_tree.o
icpx: warning: Use of '-qopenmp' recommended over '-fopenmp' [-Wrecommended-option]
/data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG  -I'/data/gannet2/ripley/R/test-MKL/Rcpp/include' -I'/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -O3 -fp-model precise -Wall   -c pugixml.cpp -o pugixml.o
icpx: warning: Use of '-qopenmp' recommended over '-fopenmp' [-Wrecommended-option]
/data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -I"/data/gannet/ripley/R/Intel/include" -DNDEBUG  -I'/data/gannet2/ripley/R/test-MKL/Rcpp/include' -I'/data/gannet2/ripley/R/test-MKL/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -O3 -fp-model precise -Wall   -c utils.cpp -o utils.o
icpx: warning: Use of '-qopenmp' recommended over '-fopenmp' [-Wrecommended-option]
1 warning generated.
/data/gannet/ripley/intel/oneapi/compiler/2024.2//bin/icpx -std=gnu++17 -shared -L/data/gannet/ripley/intel/oneapi/compiler/2024.1/lib -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o BayesSUR.so BayesSUR.o HRR_Chain.o RcppExports.o SUR_Chain.o distr.o drive.o global.o junction_tree.o pugixml.o utils.o -fopenmp -L/data/gannet/ripley/intel/oneapi/mkl/2023.2.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lifport -lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl
icpx: warning: Use of '-qopenmp' recommended over '-fopenmp' [-Wrecommended-option]
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-Intel/BayesSUR/src'
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-Intel/BayesSUR/src'
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-Intel/BayesSUR/src'
installing to /data/gannet/ripley/R/packages/tests-Intel/BayesSUR.Rcheck/00LOCK-BayesSUR/00new/BayesSUR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BayesSUR)