* using log directory ‘/data/gannet/ripley/R/packages/tests-Intel/BFpack.Rcheck’
* using R Under development (unstable) (2024-04-23 r86471)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Intel(R) oneAPI DPC++/C++ Compiler 2024.1.0 (2024.1.0.20240308)
    ifx (IFX) 2024.1.0 20240308
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘BFpack/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BFpack’ version ‘1.2.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BFpack’ can be installed ... [44s/146s] OK
* used C compiler: ‘Intel(R) oneAPI DPC++/C++ Compiler 2024.1.0 (2024.1.0.20240308)’
* used Fortran compiler: ‘ifx (IFX) 2024.1.0 20240308’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [7s/28s] OK
* checking whether the package can be loaded with stated dependencies ... [6s/40s] OK
* checking whether the package can be unloaded cleanly ... [7s/35s] OK
* checking whether the namespace can be loaded with stated dependencies ... [6s/20s] OK
* checking whether the namespace can be unloaded cleanly ... [7s/19s] OK
* checking loading without being on the library search path ... [7s/43s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [64s/217s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [8s/37s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [22s/75s]
 [23s/79s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(BFpack)
  Loading required package: bain
  Registered S3 methods overwritten by 'BFpack':
    method               from
    get_estimates.lm     bain
    get_estimates.t_test bain
  > 
  > test_check("BFpack")
  [ FAIL 2 | WARN 1 | SKIP 9 | PASS 58 ]
  
  ══ Skipped tests (9) ═══════════════════════════════════════════════════════════
  • On CRAN (9): 'test_BFergm.R:7:3', 'test_BFergm.R:33:3', 'test_BFmeta.R:13:3',
    'test_BFmlm.R:36:3', 'test_application4_BF.mlm_regression.R:3:3',
    'test_application6_BF.mlm_correlations.R:4:3',
    'test_application7_BF.lmerMod.R:4:3', 'test_application7_BF.lmerMod.R:25:3',
    'test_ttest.R:61:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_BFcortest.R:11:3'): BF.cor_test exploratory hypotheses on correlations correctly evaluated ──
  BF1$PHP_exploratory not equivalent to `PHPexplo`.
  1/9 mismatches
  [1] 0 - 0.1 == -0.1
  ── Error ('test_BFcortest.R:15:1'): (code run outside of `test_that()`) ────────
  Error in `solve.default(TSigma1EE)`: Lapack routine dgesv: system is exactly singular: U[1,1] = 0
  Backtrace:
       ▆
    1. ├─BFpack::BF(cor1, hypothesis = "wt_with_drat<drat_with_hp<wt_with_hp;\n   wt_with_drat=drat_with_hp<0<wt_with_hp") at test_BFcortest.R:15:1
    2. └─BFpack:::BF.cor_test(cor1, hypothesis = "wt_with_drat<drat_with_hp<wt_with_hp;\n   wt_with_drat=drat_with_hp<0<wt_with_hp")
    3.   ├─base::t(...)
    4.   ├─base::matrix(...)
    5.   ├─base::unlist(...)
    6.   └─base::lapply(...)
    7.     └─BFpack (local) FUN(X[[i]], ...)
    8.       └─BFpack:::Gaussian_measures(...)
    9.         ├─base::solve(TSigma1EE)
   10.         └─base::solve.default(TSigma1EE)
  
  [ FAIL 2 | WARN 1 | SKIP 9 | PASS 58 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [20s/76s] OK
* checking PDF version of manual ... [8s/28s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-Intel/BFpack.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 18:51.08, 273.91 + 30.32