* installing *source* package ‘rncl’ ...
** this is package ‘rncl’ version ‘0.8.7’
** package ‘rncl’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.3.2)’
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.3.2)’
using SDK: ‘MacOSX26.2.sdk’
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c GetNCL.cpp -o GetNCL.o
In file included from GetNCL.cpp:3:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from GetNCL.cpp:3:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:30:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/r/headers.h:66:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/platform/compiler.h:39:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/unordered_map:592:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/hash.h:22:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:71:7: error: field has incomplete type 'NxsDiscreteDatatypeMapper'
   71 |   _T1 first;
      |       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
In file included from GetNCL.cpp:3:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:30:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/r/headers.h:66:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/platform/compiler.h:37:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:319:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__math/hypot.h:21:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/limits:537:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:479:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_copyable.h:24:38: error: incomplete type 'NxsDiscreteDatatypeMapper' used in type trait expression
   24 |     : public integral_constant<bool, __is_trivially_copyable(_Tp)> {};
      |                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_relocatable.h:34:44: note: in instantiation of template class 'std::is_trivially_copyable<NxsDiscreteDatatypeMapper>' requested here
   34 | struct __libcpp_is_trivially_relocatable : is_trivially_copyable<_Tp> {};
      |                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:75:23: note: in instantiation of template class 'std::__libcpp_is_trivially_relocatable<NxsDiscreteDatatypeMapper>' requested here
   75 |       __conditional_t<__libcpp_is_trivially_relocatable<_T1>::value && __libcpp_is_trivially_relocatable<_T2>::value,
      |                       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
1 warning and 2 errors generated.
make[1]: *** [GetNCL.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
1 warning generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c collapse_singles.cpp -o collapse_singles.o
In file included from collapse_singles.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
collapse_singles.cpp:25:13: warning: implicit conversion loses integer precision: 'typename iterator_traits<__wrap_iter<int *>>::difference_type' (aka 'long') to 'int' [-Wshorten-64-to-32]
   25 |     int j = count_if (tab_tips.begin(), tab_tips.end(), is_one);
      |         ~   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from collapse_singles.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:41:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/Vector.h:51:
/Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Vector.h:1082:32: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
 1082 |         RCPP_LOOP_UNROLL(start,other)
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/Users/ripley/R/Library/Rcpp/include/Rcpp/macros/unroll.h:51:21: note: expanded from macro 'RCPP_LOOP_UNROLL'
   51 |         TARGET[i] = SOURCE[i] ; i++ ;                 \
      |                   ~ ^~~~~~~~~
/Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Vector.h:1068:9: note: in instantiation of function template specialization 'Rcpp::Vector<13>::import_expression<Rcpp::Range>' requested here
 1068 |         import_expression<VEC>( other.get_ref() , n ) ;
      |         ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Vector.h:164:9: note: in instantiation of function template specialization 'Rcpp::Vector<13>::import_sugar_expression<false, Rcpp::Range>' requested here
  164 |         import_sugar_expression( other, typename traits::same_type<Vector,VEC>::type() ) ;
      |         ^
collapse_singles.cpp:31:27: note: in instantiation of function template specialization 'Rcpp::Vector<13>::Vector<false, Rcpp::Range>' requested here
   31 |   Rcpp::IntegerVector v = Rcpp::seq(0, x.size()-1);
      |                           ^
In file included from collapse_singles.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:41:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/Vector.h:51:
/Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Vector.h:1082:32: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
 1082 |         RCPP_LOOP_UNROLL(start,other)
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/Users/ripley/R/Library/Rcpp/include/Rcpp/macros/unroll.h:52:21: note: expanded from macro 'RCPP_LOOP_UNROLL'
   52 |         TARGET[i] = SOURCE[i] ; i++ ;                 \
      |                   ~ ^~~~~~~~~
In file included from collapse_singles.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:41:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/Vector.h:51:
/Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Vector.h:1082:32: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
 1082 |         RCPP_LOOP_UNROLL(start,other)
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/Users/ripley/R/Library/Rcpp/include/Rcpp/macros/unroll.h:53:21: note: expanded from macro 'RCPP_LOOP_UNROLL'
   53 |         TARGET[i] = SOURCE[i] ; i++ ;                 \
      |                   ~ ^~~~~~~~~
In file included from collapse_singles.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:41:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/Vector.h:51:
/Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Vector.h:1082:32: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
 1082 |         RCPP_LOOP_UNROLL(start,other)
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/Users/ripley/R/Library/Rcpp/include/Rcpp/macros/unroll.h:54:21: note: expanded from macro 'RCPP_LOOP_UNROLL'
   54 |         TARGET[i] = SOURCE[i] ; i++ ;                 \
      |                   ~ ^~~~~~~~~
In file included from collapse_singles.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:41:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/Vector.h:51:
/Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Vector.h:1082:32: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
 1082 |         RCPP_LOOP_UNROLL(start,other)
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/Users/ripley/R/Library/Rcpp/include/Rcpp/macros/unroll.h:58:19: note: expanded from macro 'RCPP_LOOP_UNROLL'
   58 |       TARGET[i] = SOURCE[i] ; i++ ; /* fallthrough */ \
      |                 ~ ^~~~~~~~~
In file included from collapse_singles.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:41:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/Vector.h:51:
/Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Vector.h:1082:32: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
 1082 |         RCPP_LOOP_UNROLL(start,other)
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/Users/ripley/R/Library/Rcpp/include/Rcpp/macros/unroll.h:60:19: note: expanded from macro 'RCPP_LOOP_UNROLL'
   60 |       TARGET[i] = SOURCE[i] ; i++ ; /* fallthrough */ \
      |                 ~ ^~~~~~~~~
In file included from collapse_singles.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:41:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/Vector.h:51:
/Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Vector.h:1082:32: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'typename storage_type<13>::type' (aka 'int') [-Wshorten-64-to-32]
 1082 |         RCPP_LOOP_UNROLL(start,other)
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/Users/ripley/R/Library/Rcpp/include/Rcpp/macros/unroll.h:62:19: note: expanded from macro 'RCPP_LOOP_UNROLL'
   62 |       TARGET[i] = SOURCE[i] ; i++ ; /* fallthrough */ \
      |                 ~ ^~~~~~~~~
In file included from collapse_singles.cpp:1:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:79:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/sugar.h:30:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/operators/operators.h:27:
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/operators/Comparator_With_One_Value.h:45:21: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
   45 |                 return (this->*m)(i) ;
      |                        ~          ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Vector.h:1082:32: note: in instantiation of member function 'Rcpp::sugar::Comparator_With_One_Value<13, Rcpp::sugar::equal<13>, true, Rcpp::Vector<13>>::operator[]' requested here
 1082 |         RCPP_LOOP_UNROLL(start,other)
      |                                ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Vector.h:1068:9: note: in instantiation of function template specialization 'Rcpp::Vector<10>::import_expression<Rcpp::sugar::Comparator_With_One_Value<13, Rcpp::sugar::equal<13>, true, Rcpp::Vector<13>>>' requested here
 1068 |         import_expression<VEC>( other.get_ref() , n ) ;
      |         ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Vector.h:164:9: note: in instantiation of function template specialization 'Rcpp::Vector<10>::import_sugar_expression<true, Rcpp::sugar::Comparator_With_One_Value<13, Rcpp::sugar::equal<13>, true, Rcpp::Vector<13>>>' requested here
  164 |         import_sugar_expression( other, typename traits::same_type<Vector,VEC>::type() ) ;
      |         ^
/Users/ripley/R/Library/Rcpp/include/Rcpp/vector/Vector.h:386:13: note: in instantiation of function template specialization 'Rcpp::Vector<10>::Vector<true, Rcpp::sugar::Comparator_With_One_Value<13, Rcpp::sugar::equal<13>, true, Rcpp::Vector<13>>>' requested here
  386 |             rhs
      |             ^
collapse_singles.cpp:34:11: note: in instantiation of function template specialization 'Rcpp::Vector<13>::operator[]<10, true, Rcpp::sugar::Comparator_With_One_Value<13, Rcpp::sugar::equal<13>, true, Rcpp::Vector<13>>>' requested here
   34 |   return v[x == y];
      |           ^
10 warnings generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxsassumptionsblock.cpp -o nxsassumptionsblock.o
In file included from nxsassumptionsblock.cpp:19:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/iomanip:52:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__ostream/put_character_sequence.h:19:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__locale_dir/pad_and_output.h:16:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/ios:223:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__locale:19:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__mutex/once_flag.h:21:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/tuple:1438:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/utility:257:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:71:7: error: field has incomplete type 'NxsDiscreteDatatypeMapper'
   71 |   _T1 first;
      |       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
In file included from nxsassumptionsblock.cpp:19:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/iomanip:52:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__ostream/put_character_sequence.h:19:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__locale_dir/pad_and_output.h:16:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/ios:223:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__locale:18:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__memory/shared_count.h:13:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/typeinfo:392:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:479:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_copyable.h:24:38: error: incomplete type 'NxsDiscreteDatatypeMapper' used in type trait expression
   24 |     : public integral_constant<bool, __is_trivially_copyable(_Tp)> {};
      |                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_relocatable.h:34:44: note: in instantiation of template class 'std::is_trivially_copyable<NxsDiscreteDatatypeMapper>' requested here
   34 | struct __libcpp_is_trivially_relocatable : is_trivially_copyable<_Tp> {};
      |                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:75:23: note: in instantiation of template class 'std::__libcpp_is_trivially_relocatable<NxsDiscreteDatatypeMapper>' requested here
   75 |       __conditional_t<__libcpp_is_trivially_relocatable<_T1>::value && __libcpp_is_trivially_relocatable<_T2>::value,
      |                       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
2 errors generated.
make[1]: *** [nxsassumptionsblock.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxsblock.cpp -o nxsblock.o
In file included from nxsblock.cpp:24:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
1 warning generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxscharactersblock.cpp -o nxscharactersblock.o
In file included from nxscharactersblock.cpp:23:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/iomanip:52:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__ostream/put_character_sequence.h:19:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__locale_dir/pad_and_output.h:16:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/ios:223:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__locale:19:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__mutex/once_flag.h:21:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/tuple:1438:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/utility:257:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:71:7: error: field has incomplete type 'NxsDiscreteDatatypeMapper'
   71 |   _T1 first;
      |       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
In file included from nxscharactersblock.cpp:23:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/iomanip:52:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__ostream/put_character_sequence.h:19:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__locale_dir/pad_and_output.h:16:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/ios:223:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__locale:18:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__memory/shared_count.h:13:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/typeinfo:392:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:479:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_copyable.h:24:38: error: incomplete type 'NxsDiscreteDatatypeMapper' used in type trait expression
   24 |     : public integral_constant<bool, __is_trivially_copyable(_Tp)> {};
      |                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_relocatable.h:34:44: note: in instantiation of template class 'std::is_trivially_copyable<NxsDiscreteDatatypeMapper>' requested here
   34 | struct __libcpp_is_trivially_relocatable : is_trivially_copyable<_Tp> {};
      |                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:75:23: note: in instantiation of template class 'std::__libcpp_is_trivially_relocatable<NxsDiscreteDatatypeMapper>' requested here
   75 |       __conditional_t<__libcpp_is_trivially_relocatable<_T1>::value && __libcpp_is_trivially_relocatable<_T2>::value,
      |                       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
nxscharactersblock.cpp:1692:16: warning: variable 'colIndex' set but not used [-Wunused-but-set-variable]
 1692 |         for (unsigned colIndex = 0; rowIt != discreteMatrix.end(); ++colIndex, ++rowIt)
      |                       ^
nxscharactersblock.cpp:2074:103: warning: implicit conversion loses integer precision: 'int' to 'const key_type' (aka 'const char') [-Wimplicit-int-conversion]
 2074 |                                                  || (! respectingCase && (userEquates.find(toupper(c)) != userEquates.end() || userEquates.find(tolower(*pp)) != userEquates.end())))
      |                                                                                                                                            ~~~~ ^~~~~~~~~~~~
nxscharactersblock.cpp:2074:50: warning: implicit conversion loses integer precision: 'int' to 'const key_type' (aka 'const char') [-Wimplicit-int-conversion]
 2074 |                                                  || (! respectingCase && (userEquates.find(toupper(c)) != userEquates.end() || userEquates.find(tolower(*pp)) != userEquates.end())))
      |                                                                                       ~~~~ ^~~~~~~~~~
nxscharactersblock.cpp:2542:18: warning: implicit conversion loses integer precision: 'int' to 'const char' [-Wimplicit-int-conversion]
 2542 |                 const char u = toupper(c);
      |                            ~   ^~~~~~~~~~
nxscharactersblock.cpp:2578:18: warning: implicit conversion loses integer precision: 'int' to 'const char' [-Wimplicit-int-conversion]
 2578 |                 const char u = toupper(c);
      |                            ~   ^~~~~~~~~~
nxscharactersblock.cpp:2600:18: warning: implicit conversion loses integer precision: 'int' to 'const char' [-Wimplicit-int-conversion]
 2600 |                 const char u = toupper(c);
      |                            ~   ^~~~~~~~~~
nxscharactersblock.cpp:3355:34: warning: unused variable 'cit' [-Wunused-variable]
 3355 |         NxsStringVector::const_iterator cit;
      |                                         ^~~
7 warnings and 2 errors generated.
make[1]: *** [nxscharactersblock.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxscxxdiscretematrix.cpp -o nxscxxdiscretematrix.o
In file included from nxscxxdiscretematrix.cpp:19:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/iterator:693:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__iterator/istreambuf_iterator.h:19:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__string/char_traits.h:14:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/find_end.h:19:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:71:7: error: field has incomplete type 'NxsDiscreteDatatypeMapper'
   71 |   _T1 first;
      |       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
In file included from nxscxxdiscretematrix.cpp:19:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/iterator:687:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__iterator/advance.h:26:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/limits:537:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:479:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_copyable.h:24:38: error: incomplete type 'NxsDiscreteDatatypeMapper' used in type trait expression
   24 |     : public integral_constant<bool, __is_trivially_copyable(_Tp)> {};
      |                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_relocatable.h:34:44: note: in instantiation of template class 'std::is_trivially_copyable<NxsDiscreteDatatypeMapper>' requested here
   34 | struct __libcpp_is_trivially_relocatable : is_trivially_copyable<_Tp> {};
      |                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:75:23: note: in instantiation of template class 'std::__libcpp_is_trivially_relocatable<NxsDiscreteDatatypeMapper>' requested here
   75 |       __conditional_t<__libcpp_is_trivially_relocatable<_T1>::value && __libcpp_is_trivially_relocatable<_T2>::value,
      |                       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
nxscxxdiscretematrix.cpp:398:34: warning: implicit conversion loses integer precision: 'const unsigned int' to 'value_type' (aka 'signed char') [-Wimplicit-int-conversion]
  398 |         stateListAlias.push_back(nCodesInMissing);
      |                        ~~~~~~~~~ ^~~~~~~~~~~~~~~
nxscxxdiscretematrix.cpp:405:107: warning: implicit conversion loses integer precision: 'unsigned int' to 'NxsCDiscreteState_t' (aka 'signed char') [-Wimplicit-int-conversion]
  405 |         NxsCDiscreteState_t nextStateCode = (standardizeCoding ? (newMissingStateCode + 1) : this->nativeCMatrix.nStates);
      |                             ~~~~~~~~~~~~~                                                    ~~~~~~~~~~~~~~~~~~~~^~~~~~~
nxscxxdiscretematrix.cpp:417:29: warning: implicit conversion loses integer precision: 'const unsigned int' to 'value_type' (aka 'signed char') [-Wimplicit-int-conversion]
  417 |                         stateListAlias.push_back(ns);
      |                                        ~~~~~~~~~ ^~
nxscxxdiscretematrix.cpp:432:78: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
  432 |         this->nativeCMatrix.nChar = (this->nativeCMatrix.nTax == 0 ? 0 : toInclude->size());
      |                                   ~                                      ~~~~~~~~~~~^~~~~~
4 warnings and 2 errors generated.
make[1]: *** [nxscxxdiscretematrix.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxsdatablock.cpp -o nxsdatablock.o
In file included from nxsdatablock.cpp:20:
In file included from ./ncl/nxsdatablock.h:23:
In file included from ./ncl/nxscharactersblock.h:23:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/sstream:323:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__ostream/basic_ostream.h:18:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__memory/unique_ptr.h:20:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/hash.h:22:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:71:7: error: field has incomplete type 'NxsDiscreteDatatypeMapper'
   71 |   _T1 first;
      |       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
In file included from nxsdatablock.cpp:20:
In file included from ./ncl/nxsdatablock.h:23:
In file included from ./ncl/nxscharactersblock.h:23:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/sstream:323:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__ostream/basic_ostream.h:18:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__memory/unique_ptr.h:20:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/hash.h:22:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:37:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_relocatable.h:15:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_copyable.h:24:38: error: incomplete type 'NxsDiscreteDatatypeMapper' used in type trait expression
   24 |     : public integral_constant<bool, __is_trivially_copyable(_Tp)> {};
      |                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_relocatable.h:34:44: note: in instantiation of template class 'std::is_trivially_copyable<NxsDiscreteDatatypeMapper>' requested here
   34 | struct __libcpp_is_trivially_relocatable : is_trivially_copyable<_Tp> {};
      |                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:75:23: note: in instantiation of template class 'std::__libcpp_is_trivially_relocatable<NxsDiscreteDatatypeMapper>' requested here
   75 |       __conditional_t<__libcpp_is_trivially_relocatable<_T1>::value && __libcpp_is_trivially_relocatable<_T2>::value,
      |                       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
2 errors generated.
make[1]: *** [nxsdatablock.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxsdistancedatum.cpp -o nxsdistancedatum.o
In file included from nxsdistancedatum.cpp:20:
In file included from ./ncl/ncl.h:44:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/algorithm:1839:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/copy.h:12:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/copy_move_common.h:13:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/unwrap_range.h:19:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:71:7: error: field has incomplete type 'NxsDiscreteDatatypeMapper'
   71 |   _T1 first;
      |       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
In file included from nxsdistancedatum.cpp:20:
In file included from ./ncl/ncl.h:25:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:319:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__math/hypot.h:21:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/limits:537:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:479:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_copyable.h:24:38: error: incomplete type 'NxsDiscreteDatatypeMapper' used in type trait expression
   24 |     : public integral_constant<bool, __is_trivially_copyable(_Tp)> {};
      |                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_relocatable.h:34:44: note: in instantiation of template class 'std::is_trivially_copyable<NxsDiscreteDatatypeMapper>' requested here
   34 | struct __libcpp_is_trivially_relocatable : is_trivially_copyable<_Tp> {};
      |                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:75:23: note: in instantiation of template class 'std::__libcpp_is_trivially_relocatable<NxsDiscreteDatatypeMapper>' requested here
   75 |       __conditional_t<__libcpp_is_trivially_relocatable<_T1>::value && __libcpp_is_trivially_relocatable<_T2>::value,
      |                       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
2 errors generated.
make[1]: *** [nxsdistancedatum.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxsdistancesblock.cpp -o nxsdistancesblock.o
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxsemptyblock.cpp -o nxsemptyblock.o
In file included from nxsemptyblock.cpp:20:
In file included from ./ncl/ncl.h:44:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/algorithm:1839:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/copy.h:12:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/copy_move_common.h:13:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/unwrap_range.h:19:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:71:7: error: field has incomplete type 'NxsDiscreteDatatypeMapper'
   71 |   _T1 first;
      |       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
In file included from nxsemptyblock.cpp:20:
In file included from ./ncl/ncl.h:25:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/cmath:319:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__math/hypot.h:21:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/limits:537:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:479:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_copyable.h:24:38: error: incomplete type 'NxsDiscreteDatatypeMapper' used in type trait expression
   24 |     : public integral_constant<bool, __is_trivially_copyable(_Tp)> {};
      |                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_relocatable.h:34:44: note: in instantiation of template class 'std::is_trivially_copyable<NxsDiscreteDatatypeMapper>' requested here
   34 | struct __libcpp_is_trivially_relocatable : is_trivially_copyable<_Tp> {};
      |                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:75:23: note: in instantiation of template class 'std::__libcpp_is_trivially_relocatable<NxsDiscreteDatatypeMapper>' requested here
   75 |       __conditional_t<__libcpp_is_trivially_relocatable<_T1>::value && __libcpp_is_trivially_relocatable<_T2>::value,
      |                       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
2 errors generated.
make[1]: *** [nxsemptyblock.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxsexception.cpp -o nxsexception.o
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxsmultiformat.cpp -o nxsmultiformat.o
In file included from nxsmultiformat.cpp:48:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/fstream:198:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__filesystem/path.h:25:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/string:600:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/hash.h:22:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:71:7: error: field has incomplete type 'NxsDiscreteDatatypeMapper'
   71 |   _T1 first;
      |       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
In file included from nxsmultiformat.cpp:48:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/fstream:198:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__filesystem/path.h:25:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/string:594:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/remove.h:12:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/find.h:16:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__bit/countr.h:15:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__bit/rotate.h:15:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/limits:537:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:479:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_copyable.h:24:38: error: incomplete type 'NxsDiscreteDatatypeMapper' used in type trait expression
   24 |     : public integral_constant<bool, __is_trivially_copyable(_Tp)> {};
      |                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_relocatable.h:34:44: note: in instantiation of template class 'std::is_trivially_copyable<NxsDiscreteDatatypeMapper>' requested here
   34 | struct __libcpp_is_trivially_relocatable : is_trivially_copyable<_Tp> {};
      |                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:75:23: note: in instantiation of template class 'std::__libcpp_is_trivially_relocatable<NxsDiscreteDatatypeMapper>' requested here
   75 |       __conditional_t<__libcpp_is_trivially_relocatable<_T1>::value && __libcpp_is_trivially_relocatable<_T2>::value,
      |                       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
2 errors generated.
make[1]: *** [nxsmultiformat.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxspublicblocks.cpp -o nxspublicblocks.o
In file included from nxspublicblocks.cpp:22:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/istream:169:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__iterator/istreambuf_iterator.h:19:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__string/char_traits.h:14:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/find_end.h:19:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:71:7: error: field has incomplete type 'NxsDiscreteDatatypeMapper'
   71 |   _T1 first;
      |       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
In file included from nxspublicblocks.cpp:22:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/istream:169:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__iterator/istreambuf_iterator.h:19:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__string/char_traits.h:13:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/find.h:16:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__bit/countr.h:15:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__bit/rotate.h:15:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/limits:537:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:479:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_copyable.h:24:38: error: incomplete type 'NxsDiscreteDatatypeMapper' used in type trait expression
   24 |     : public integral_constant<bool, __is_trivially_copyable(_Tp)> {};
      |                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_relocatable.h:34:44: note: in instantiation of template class 'std::is_trivially_copyable<NxsDiscreteDatatypeMapper>' requested here
   34 | struct __libcpp_is_trivially_relocatable : is_trivially_copyable<_Tp> {};
      |                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:75:23: note: in instantiation of template class 'std::__libcpp_is_trivially_relocatable<NxsDiscreteDatatypeMapper>' requested here
   75 |       __conditional_t<__libcpp_is_trivially_relocatable<_T1>::value && __libcpp_is_trivially_relocatable<_T2>::value,
      |                       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
In file included from nxspublicblocks.cpp:27:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from nxspublicblocks.cpp:27:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:50:
/Users/ripley/R/Library/Rcpp/include/Rcpp/Language.h:192:81: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
  192 |         unary_call( Language call_, R_xlen_t index ) : call(call_), proxy(call_,index){}
      |                                                                     ~~~~~       ^~~~~
/Users/ripley/R/Library/Rcpp/include/Rcpp/Language.h:209:101: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
  209 |         binary_call( Language call_, R_xlen_t index1, R_xlen_t index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
      |                                                                                        ~~~~~~       ^~~~~~
/Users/ripley/R/Library/Rcpp/include/Rcpp/Language.h:209:123: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
  209 |         binary_call( Language call_, R_xlen_t index1, R_xlen_t index2 ) : call(call_), proxy1(call_,index1), proxy2(call_,index2){}
      |                                                                                                              ~~~~~~       ^~~~~~
In file included from nxspublicblocks.cpp:27:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:79:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/sugar.h:31:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/functions.h:59:
/Users/ripley/R/Library/Rcpp/include/Rcpp/sugar/functions/head.h:34:68: warning: implicit conversion loses integer precision: 'R_xlen_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
   34 |         Head( const VEC_TYPE& object_, R_xlen_t n_ ) : object(object_), n(n_) {
      |                                                                          ~^~
5 warnings and 2 errors generated.
make[1]: *** [nxspublicblocks.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxsreader.cpp -o nxsreader.o
In file included from nxsreader.cpp:27:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from nxsreader.cpp:20:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/algorithm:1839:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/copy.h:12:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/copy_move_common.h:13:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/unwrap_range.h:19:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:71:7: error: field has incomplete type 'NxsDiscreteDatatypeMapper'
   71 |   _T1 first;
      |       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
In file included from nxsreader.cpp:20:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/algorithm:1838:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/binary_search.h:14:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/lower_bound.h:14:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__algorithm/iterator_operations.h:16:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__iterator/advance.h:26:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/limits:537:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:479:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_copyable.h:24:38: error: incomplete type 'NxsDiscreteDatatypeMapper' used in type trait expression
   24 |     : public integral_constant<bool, __is_trivially_copyable(_Tp)> {};
      |                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_relocatable.h:34:44: note: in instantiation of template class 'std::is_trivially_copyable<NxsDiscreteDatatypeMapper>' requested here
   34 | struct __libcpp_is_trivially_relocatable : is_trivially_copyable<_Tp> {};
      |                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:75:23: note: in instantiation of template class 'std::__libcpp_is_trivially_relocatable<NxsDiscreteDatatypeMapper>' requested here
   75 |       __conditional_t<__libcpp_is_trivially_relocatable<_T1>::value && __libcpp_is_trivially_relocatable<_T2>::value,
      |                       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
1 warning and 2 errors generated.
make[1]: *** [nxsreader.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxssetreader.cpp -o nxssetreader.o
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxsstring.cpp -o nxsstring.o
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxstaxaassociationblock.cpp -o nxstaxaassociationblock.o
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxstaxablock.cpp -o nxstaxablock.o
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxstoken.cpp -o nxstoken.o
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxstreesblock.cpp -o nxstreesblock.o
In file included from nxstreesblock.cpp:20:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
1 warning generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c nxsunalignedblock.cpp -o nxsunalignedblock.o
In file included from nxsunalignedblock.cpp:21:
In file included from ./ncl/nxsunalignedblock.h:23:
In file included from ./ncl/nxsdefs.h:22:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/ios:223:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__locale:19:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__mutex/once_flag.h:21:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/tuple:1438:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/utility:257:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:71:7: error: field has incomplete type 'NxsDiscreteDatatypeMapper'
   71 |   _T1 first;
      |       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
In file included from nxsunalignedblock.cpp:21:
In file included from ./ncl/nxsunalignedblock.h:23:
In file included from ./ncl/nxsdefs.h:22:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/iostream:45:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/ios:223:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__locale:18:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__memory/shared_count.h:13:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/typeinfo:392:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:479:
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_copyable.h:24:38: error: incomplete type 'NxsDiscreteDatatypeMapper' used in type trait expression
   24 |     : public integral_constant<bool, __is_trivially_copyable(_Tp)> {};
      |                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__type_traits/is_trivially_relocatable.h:34:44: note: in instantiation of template class 'std::is_trivially_copyable<NxsDiscreteDatatypeMapper>' requested here
   34 | struct __libcpp_is_trivially_relocatable : is_trivially_copyable<_Tp> {};
      |                                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__utility/pair.h:75:23: note: in instantiation of template class 'std::__libcpp_is_trivially_relocatable<NxsDiscreteDatatypeMapper>' requested here
   75 |       __conditional_t<__libcpp_is_trivially_relocatable<_T1>::value && __libcpp_is_trivially_relocatable<_T2>::value,
      |                       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:385:48: note: in instantiation of template class 'std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>' requested here
  385 |     return static_cast<size_type>(this->__end_ - this->__begin_);
      |                                                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:530:28: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::size' requested here
  530 |     size_type __old_size = size();
      |                            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:248:16: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::clear' requested here
  248 |         __vec_.clear();
      |                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__vector/vector.h:259:67: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::__destroy_vector::operator()' requested here
  259 |   _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); }
      |                                                                   ^
./ncl/nxscharactersblock.h:510:11: note: in instantiation of member function 'std::vector<std::pair<NxsDiscreteDatatypeMapper, std::set<unsigned int>>>::~vector' requested here
  510 |                 virtual ~NxsCharactersBlock() {}
      |                         ^
./ncl/nxscharactersblock.h:34:7: note: forward declaration of 'NxsDiscreteDatatypeMapper'
   34 | class NxsDiscreteDatatypeMapper;
      |       ^
2 errors generated.
make[1]: *** [nxsunalignedblock.o] Error 1
clang -mmacos-version-min=26 -std=gnu23 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/progress/include' -isystem /opt/R/arm64/include    -fPIC  -falign-functions=8 -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -Wstrict-prototypes  -c rncl_init.c -o rncl_init.o
make[1]: Target `all' not remade because of errors.
ERROR: compilation failed for package ‘rncl’
* removing ‘/Users/ripley/R/packages/tests-devel/rncl.Rcheck/rncl’