* installing *source* package ‘genepop’ ...
** this is package ‘genepop’ version ‘1.2.11’
** package ‘genepop’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.3.2)’
using SDK: ‘MacOSX26.2.sdk’
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppProgress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c CT_tests.cpp -o CT_tests.o
In file included from CT_tests.cpp:40:
In file included from ./CT_tests.h:38:
In file included from ./GenepopS.h:42:
./MersenneTwister.h:13:51: warning: implicit conversion loses integer precision: 'unsigned long' to 'result_type' (aka 'unsigned int') [-Wshorten-64-to-32]
   13 |   void seed(unsigned long alea_seed) {MTRAND.seed(alea_seed);}
      |                                              ~~~~ ^~~~~~~~~
In file included from CT_tests.cpp:40:
./CT_tests.h:115:42: warning: unused variable 'pp' [-Wunused-variable]
  115 |   std::vector<CPopulation *>::iterator p,pp; // CPopulation contient les popName()
      |                                          ^~
./CT_tests.h:116:39: warning: unused variable 'p1' [-Wunused-variable]
  116 |   std::vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
      |                                       ^~
./CT_tests.h:116:42: warning: unused variable 'p2' [-Wunused-variable]
  116 |   std::vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
      |                                          ^~
In file included from CT_tests.cpp:47:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
CT_tests.cpp:783:34: warning: unused variable 'p1' [-Wunused-variable]
  783 |   vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
      |                                  ^~
CT_tests.cpp:783:37: warning: unused variable 'p2' [-Wunused-variable]
  783 |   vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
      |                                     ^~
7 warnings generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppProgress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c F_est.cpp -o F_est.o
In file included from F_est.cpp:38:
./MersenneTwister.h:13:51: warning: implicit conversion loses integer precision: 'unsigned long' to 'result_type' (aka 'unsigned int') [-Wshorten-64-to-32]
   13 |   void seed(unsigned long alea_seed) {MTRAND.seed(alea_seed);}
      |                                              ~~~~ ^~~~~~~~~
In file included from F_est.cpp:52:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from F_est.cpp:54:
In file included from /Users/ripley/R/Library/RcppProgress/include/progress.hpp:12:
/Users/ripley/R/Library/RcppProgress/include/interruptable_progress_monitor.hpp:139:45: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wimplicit-float-conversion]
  139 |                 if (is_display_on()) _progress_bar.update(progress(current));
      |                                                    ~~~~~~ ^~~~~~~~~~~~~~~~~
F_est.cpp:175:2: error: reference to 'identity' is ambiguous
  175 |         identity=identBool;
      |         ^
F_est.cpp:97:17: note: candidate found by name lookup is 'NS_F_est::identity'
   97 |     static bool identity; //indic allele size/identity
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/identity.h:45:8: note: candidate found by name lookup is 'std::identity'
   45 | struct identity {
      |        ^
F_est.cpp:541:3: error: reference to 'identity' is ambiguous
  541 |   identity=identitybool;
      |   ^
F_est.cpp:97:17: note: candidate found by name lookup is 'NS_F_est::identity'
   97 |     static bool identity; //indic allele size/identity
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/identity.h:45:8: note: candidate found by name lookup is 'std::identity'
   45 | struct identity {
      |        ^
F_est.cpp:549:8: error: reference to 'identity' is ambiguous
  549 |                  if (identity) {
      |                      ^
F_est.cpp:97:17: note: candidate found by name lookup is 'NS_F_est::identity'
   97 |     static bool identity; //indic allele size/identity
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/identity.h:45:8: note: candidate found by name lookup is 'std::identity'
   45 | struct identity {
      |        ^
F_est.cpp:549:8: error: reference to 'identity' is ambiguous
  549 |                  if (identity) {
      |                      ^
F_est.cpp:97:17: note: candidate found by name lookup is 'NS_F_est::identity'
   97 |     static bool identity; //indic allele size/identity
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/identity.h:45:8: note: candidate found by name lookup is 'std::identity'
   45 | struct identity {
      |        ^
F_est.cpp:549:16: error: expected unqualified-id
  549 |                  if (identity) {
      |                              ^
F_est.cpp:647:1: error: reference to 'identity' is ambiguous
  647 | identity=identitybool;
      | ^
F_est.cpp:97:17: note: candidate found by name lookup is 'NS_F_est::identity'
   97 |     static bool identity; //indic allele size/identity
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/identity.h:45:8: note: candidate found by name lookup is 'std::identity'
   45 | struct identity {
      |        ^
F_est.cpp:654:13: error: reference to 'identity' is ambiguous
  654 |         if (identity) {
      |             ^
F_est.cpp:97:17: note: candidate found by name lookup is 'NS_F_est::identity'
   97 |     static bool identity; //indic allele size/identity
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/identity.h:45:8: note: candidate found by name lookup is 'std::identity'
   45 | struct identity {
      |        ^
F_est.cpp:654:13: error: reference to 'identity' is ambiguous
  654 |         if (identity) {
      |             ^
F_est.cpp:97:17: note: candidate found by name lookup is 'NS_F_est::identity'
   97 |     static bool identity; //indic allele size/identity
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/identity.h:45:8: note: candidate found by name lookup is 'std::identity'
   45 | struct identity {
      |        ^
F_est.cpp:654:21: error: expected unqualified-id
  654 |         if (identity) {
      |                     ^
F_est.cpp:666:21: error: reference to 'identity' is ambiguous
  666 |                 if (identity) {
      |                     ^
F_est.cpp:97:17: note: candidate found by name lookup is 'NS_F_est::identity'
   97 |     static bool identity; //indic allele size/identity
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/identity.h:45:8: note: candidate found by name lookup is 'std::identity'
   45 | struct identity {
      |        ^
F_est.cpp:666:21: error: reference to 'identity' is ambiguous
  666 |                 if (identity) {
      |                     ^
F_est.cpp:97:17: note: candidate found by name lookup is 'NS_F_est::identity'
   97 |     static bool identity; //indic allele size/identity
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/identity.h:45:8: note: candidate found by name lookup is 'std::identity'
   45 | struct identity {
      |        ^
F_est.cpp:666:29: error: expected unqualified-id
  666 |                 if (identity) {
      |                             ^
F_est.cpp:692:13: error: reference to 'identity' is ambiguous
  692 |         if (identity) {
      |             ^
F_est.cpp:97:17: note: candidate found by name lookup is 'NS_F_est::identity'
   97 |     static bool identity; //indic allele size/identity
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/identity.h:45:8: note: candidate found by name lookup is 'std::identity'
   45 | struct identity {
      |        ^
F_est.cpp:692:13: error: reference to 'identity' is ambiguous
  692 |         if (identity) {
      |             ^
F_est.cpp:97:17: note: candidate found by name lookup is 'NS_F_est::identity'
   97 |     static bool identity; //indic allele size/identity
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/identity.h:45:8: note: candidate found by name lookup is 'std::identity'
   45 | struct identity {
      |        ^
F_est.cpp:692:21: error: expected unqualified-id
  692 |         if (identity) {
      |                     ^
F_est.cpp:807:10: error: reference to 'identity' is ambiguous
  807 |                           if (identity) {
      |                               ^
F_est.cpp:97:17: note: candidate found by name lookup is 'NS_F_est::identity'
   97 |     static bool identity; //indic allele size/identity
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/identity.h:45:8: note: candidate found by name lookup is 'std::identity'
   45 | struct identity {
      |        ^
F_est.cpp:807:10: error: reference to 'identity' is ambiguous
  807 |                           if (identity) {
      |                               ^
F_est.cpp:97:17: note: candidate found by name lookup is 'NS_F_est::identity'
   97 |     static bool identity; //indic allele size/identity
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/identity.h:45:8: note: candidate found by name lookup is 'std::identity'
   45 | struct identity {
      |        ^
F_est.cpp:807:18: error: expected unqualified-id
  807 |                           if (identity) {
      |                                       ^
F_est.cpp:842:13: error: reference to 'identity' is ambiguous
  842 |         if (identity) {
      |             ^
F_est.cpp:97:17: note: candidate found by name lookup is 'NS_F_est::identity'
   97 |     static bool identity; //indic allele size/identity
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/__functional/identity.h:45:8: note: candidate found by name lookup is 'std::identity'
   45 | struct identity {
      |        ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
3 warnings and 20 errors generated.
make[1]: *** [F_est.o] Error 1
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppProgress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c GenepopS.cpp -o GenepopS.o
In file included from GenepopS.cpp:50:
In file included from ./GenepopS.h:42:
./MersenneTwister.h:13:51: warning: implicit conversion loses integer precision: 'unsigned long' to 'result_type' (aka 'unsigned int') [-Wshorten-64-to-32]
   13 |   void seed(unsigned long alea_seed) {MTRAND.seed(alea_seed);}
      |                                              ~~~~ ^~~~~~~~~
In file included from GenepopS.cpp:56:
./CT_tests.h:115:42: warning: unused variable 'pp' [-Wunused-variable]
  115 |   std::vector<CPopulation *>::iterator p,pp; // CPopulation contient les popName()
      |                                          ^~
./CT_tests.h:116:39: warning: unused variable 'p1' [-Wunused-variable]
  116 |   std::vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
      |                                       ^~
./CT_tests.h:116:42: warning: unused variable 'p2' [-Wunused-variable]
  116 |   std::vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
      |                                          ^~
In file included from GenepopS.cpp:64:
In file included from ./RGenepop.h:46:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
GenepopS.cpp:1489:16: warning: variable 'popit' set but not used [-Wunused-but-set-variable]
 1489 |         size_t nb_all,popit;
      |                       ^
GenepopS.cpp:2148:29: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
 2148 |       ABC.bootstrapOverLoci(bootmethod, &mean, 
      |           ~~~~~~~~~~~~~~~~~ ^~~~~~~~~~
GenepopS.cpp:2151:29: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
 2151 |       ABC.bootstrapOverLoci(bootmethod, &slope," for SLOPE",isolde_file);
      |           ~~~~~~~~~~~~~~~~~ ^~~~~~~~~~
GenepopS.cpp:2155:29: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
 2155 |       ABC.bootstrapOverLoci(bootmethod, &intercept, 
      |           ~~~~~~~~~~~~~~~~~ ^~~~~~~~~~
GenepopS.cpp:2385:29: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
 2385 |       ABC.bootstrapOverLoci(bootmethod, &mean_from_creatMat_isolde, 
      |           ~~~~~~~~~~~~~~~~~ ^~~~~~~~~~
GenepopS.cpp:2389:29: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
 2389 |       ABC.bootstrapOverLoci(bootmethod, &slope_from_creatMat_isolde, 
      |           ~~~~~~~~~~~~~~~~~ ^~~~~~~~~~
GenepopS.cpp:2411:29: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
 2411 |       ABC.bootstrapOverLoci(bootmethod, &intercept_from_creatMat_isolde, 
      |           ~~~~~~~~~~~~~~~~~ ^~~~~~~~~~
12 warnings generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppProgress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c HW_tests.cpp -o HW_tests.o
In file included from HW_tests.cpp:55:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from HW_tests.cpp:57:
./MersenneTwister.h:13:51: warning: implicit conversion loses integer precision: 'unsigned long' to 'result_type' (aka 'unsigned int') [-Wshorten-64-to-32]
   13 |   void seed(unsigned long alea_seed) {MTRAND.seed(alea_seed);}
      |                                              ~~~~ ^~~~~~~~~
HW_tests.cpp:191:37: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  191 |         check_restriction(nb_locus, nb_sam);
      |         ~~~~~~~~~~~~~~~~~           ^~~~~~
HW_tests.cpp:191:27: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
  191 |         check_restriction(nb_locus, nb_sam);
      |         ~~~~~~~~~~~~~~~~~ ^~~~~~~~
HW_tests.cpp:247:23: warning: variable 'necess_mark' set but not used [-Wunused-but-set-variable]
  247 | int possible_exact=0, necess_mark=0;
      |                       ^
HW_tests.cpp:1650:10: warning: variable 'kfi' set but not used [-Wunused-but-set-variable]
 1650 |   size_t kfi,allele, k;
      |          ^
HW_tests.cpp:1815:32: warning: implicit conversion when assigning computation result loses floating-point precision: 'double' to 'float' [-Wimplicit-float-conversion]
 1815 |                       chiHW+=2.*log(batchnbr*batchlgth); // i.e. *-=* 2 log(bound on freq)
      |                            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
7 warnings generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppProgress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c RGenepop.cpp -o RGenepop.o
In file included from RGenepop.cpp:39:
In file included from ./RGenepop.h:46:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from RGenepop.cpp:40:
In file included from ./GenepopS.h:42:
./MersenneTwister.h:13:51: warning: implicit conversion loses integer precision: 'unsigned long' to 'result_type' (aka 'unsigned int') [-Wshorten-64-to-32]
   13 |   void seed(unsigned long alea_seed) {MTRAND.seed(alea_seed);}
      |                                              ~~~~ ^~~~~~~~~
2 warnings generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppProgress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
1 warning generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppProgress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c bootstrap.cpp -o bootstrap.o
In file included from bootstrap.cpp:40:
In file included from ./GenepopS.h:42:
./MersenneTwister.h:13:51: warning: implicit conversion loses integer precision: 'unsigned long' to 'result_type' (aka 'unsigned int') [-Wshorten-64-to-32]
   13 |   void seed(unsigned long alea_seed) {MTRAND.seed(alea_seed);}
      |                                              ~~~~ ^~~~~~~~~
In file included from bootstrap.cpp:48:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from bootstrap.cpp:50:
In file included from /Users/ripley/R/Library/RcppProgress/include/progress.hpp:12:
/Users/ripley/R/Library/RcppProgress/include/interruptable_progress_monitor.hpp:139:45: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wimplicit-float-conversion]
  139 |                 if (is_display_on()) _progress_bar.update(progress(current));
      |                                                    ~~~~~~ ^~~~~~~~~~~~~~~~~
bootstrap.cpp:447:27: warning: implicit conversion turns floating-point number into integer: 'double' to 'size_type' (aka 'unsigned long') [-Wfloat-conversion]
  447 |     double tk = t_sorted[k-1];
      |                 ~~~~~~~~ ~^~
bootstrap.cpp:448:27: warning: implicit conversion turns floating-point number into integer: 'double' to 'size_type' (aka 'unsigned long') [-Wfloat-conversion]
  448 |     double tk1 = t_sorted[k];
      |                  ~~~~~~~~ ^
5 warnings generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppProgress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c conversions.cpp -o conversions.o
In file included from conversions.cpp:37:
In file included from ./GenepopS.h:42:
./MersenneTwister.h:13:51: warning: implicit conversion loses integer precision: 'unsigned long' to 'result_type' (aka 'unsigned int') [-Wshorten-64-to-32]
   13 |   void seed(unsigned long alea_seed) {MTRAND.seed(alea_seed);}
      |                                              ~~~~ ^~~~~~~~~
In file included from conversions.cpp:43:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
2 warnings generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppProgress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c genepop.cpp -o genepop.o
In file included from genepop.cpp:51:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from genepop.cpp:54:
In file included from ./GenepopS.h:42:
./MersenneTwister.h:13:51: warning: implicit conversion loses integer precision: 'unsigned long' to 'result_type' (aka 'unsigned int') [-Wshorten-64-to-32]
   13 |   void seed(unsigned long alea_seed) {MTRAND.seed(alea_seed);}
      |                                              ~~~~ ^~~~~~~~~
2 warnings generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppProgress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c multimig.cpp -o multimig.o
In file included from multimig.cpp:42:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from multimig.cpp:45:
In file included from ./GenepopS.h:42:
./MersenneTwister.h:13:51: warning: implicit conversion loses integer precision: 'unsigned long' to 'result_type' (aka 'unsigned int') [-Wshorten-64-to-32]
   13 |   void seed(unsigned long alea_seed) {MTRAND.seed(alea_seed);}
      |                                              ~~~~ ^~~~~~~~~
2 warnings generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppProgress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c proba.cpp -o proba.o
In file included from proba.cpp:51:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
proba.cpp:254:35: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wimplicit-float-conversion]
  254 |   else if (chi < nu+1.0) pchi= 1.0-gser(0.5*nu,0.5*chi); // Use the series representation.
      |                              ~ ~~~^~~~~~~~~~~~~~~~~~~~~
proba.cpp:255:14: warning: implicit conversion loses floating-point precision: 'double' to 'float' [-Wimplicit-float-conversion]
  255 |   else pchi= gcf(0.5*nu,0.5*chi); // Use the continued fraction representation.
      |            ~ ^~~~~~~~~~~~~~~~~~~
3 warnings generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppProgress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c settings.cpp -o settings.o
In file included from settings.cpp:40:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
In file included from settings.cpp:42:
In file included from ./GenepopS.h:42:
./MersenneTwister.h:13:51: warning: implicit conversion loses integer precision: 'unsigned long' to 'result_type' (aka 'unsigned int') [-Wshorten-64-to-32]
   13 |   void seed(unsigned long alea_seed) {MTRAND.seed(alea_seed);}
      |                                              ~~~~ ^~~~~~~~~
2 warnings generated.
clang++ -mmacos-version-min=26 -std=gnu++20 -I"/Users/ripley/R/R-devel/include" -DNDEBUG -DCOMPATIBILITYRCPP  -I'/Users/ripley/R/Library/Rcpp/include' -I'/Users/ripley/R/Library/RcppProgress/include' -isystem /opt/R/arm64/include    -fPIC  -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion   -c tools.cpp -o tools.o
In file included from tools.cpp:46:
In file included from /Users/ripley/R/Library/Rcpp/include/Rcpp.h:27:
In file included from /Users/ripley/R/Library/Rcpp/include/RcppCommon.h:192:
/Users/ripley/R/Library/Rcpp/include/Rcpp/internal/wrap.h:71:47: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
   71 |             return Rf_mkCharLen(st.data(), st.size());
      |                    ~~~~~~~~~~~~            ~~~^~~~~~
1 warning generated.
make[1]: Target `all' not remade because of errors.
ERROR: compilation failed for package ‘genepop’
* removing ‘/Users/ripley/R/packages/tests-devel/genepop.Rcheck/genepop’