* installing *source* package ‘naryn’ ... ** this is package ‘naryn’ version ‘2.6.31’ ** package ‘naryn’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-C++20/naryn/src' g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c BinFinder.cpp -o BinFinder.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c BinsManager.cpp -o BinsManager.o In file included from EMRDb.h:11, from BinsManager.cpp:1: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/map:62, from EMRDb.h:4: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c BufferedFile.cpp -o BufferedFile.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EMRDb.cpp -o EMRDb.o In file included from EMRDb.h:11, from EMRDb.cpp:1: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/map:62, from EMRDb.h:4: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EMRIdTimeInterval.cpp -o EMRIdTimeInterval.o In file included from EMRDb.h:11, from EMRIdTimeInterval.cpp:3: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/cmath:46, from EMRIdTimeInterval.cpp:1: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EMRIteratorFilterItem.cpp -o EMRIteratorFilterItem.o In file included from EMRDb.h:11, from EMRIteratorFilterItem.cpp:1: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/map:62, from EMRDb.h:4: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EMRLogicalTrack.cpp -o EMRLogicalTrack.o In file included from EMRLogicalTrack.h:8, from EMRLogicalTrack.cpp:1: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/unordered_set:36, from EMRLogicalTrack.h:4: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EMRProgressReporter.cpp -o EMRProgressReporter.o In file included from EMRProgressReporter.cpp:3: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/utility:69, from EMR.h:5: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EMRTimeConverter.cpp -o EMRTimeConverter.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EMRTimeInterval.cpp -o EMRTimeInterval.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EMRTimeStamp.cpp -o EMRTimeStamp.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EMRTrack.cpp -o EMRTrack.o In file included from EMRDb.h:11, from EMRTrack.cpp:8: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/memoryfwd.h:50, from /usr/include/c++/15/memory:65, from EMRTrack.cpp:2: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c FileUtils.cpp -o FileUtils.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRCovariance.cpp -o NRCovariance.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRDb.cpp -o NRDb.o In file included from EMRDb.h:11, from NRDb.cpp:8: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/numeric:62, from NRDb.cpp:6: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from EMRPoint.h:4, from NRTrackExpressionVars.h:22, from BinsManager.h:8, from NRCovariance.cpp:15: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/cmath:46, from NRCovariance.cpp:1: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRDist.cpp -o NRDist.o In file included from EMRPoint.h:4, from NRTrackExpressionVars.h:22, from BinsManager.h:8, from NRDist.cpp:14: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/cstdlib:46, from /data/gannet/ripley/R/cxx20/include/R.h:39, from NRDist.cpp:4: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRExtract.cpp -o NRExtract.o In file included from EMRPoint.h:4, from NRPoint.h:4, from NRExtract.cpp:4: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/cmath:46, from NRExtract.cpp:1: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NRExtract.cpp: In function ‘SEXPREC* C_emr_extract(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: NRExtract.cpp:68:87: warning: arithmetic between different enumeration types ‘NRPoint::’ and ‘C_emr_extract(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)::’ is deprecated [-Wdeprecated-enum-enum-conversion] 68 | SEXP answer = NRPoint::convert_points(out_points, NRPoint::NUM_POINT_COLS + NUM_COLS, false, do_sort, &ppoints); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ NRExtract.cpp:91:60: warning: arithmetic between different enumeration types ‘NRPoint::’ and ‘C_emr_extract(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)::’ is deprecated [-Wdeprecated-enum-enum-conversion] 91 | SET_VECTOR_ELT(answer, NRPoint::NUM_POINT_COLS + EXPR, rexpr_idx); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ NRExtract.cpp:92:60: warning: arithmetic between different enumeration types ‘NRPoint::’ and ‘C_emr_extract(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)::’ is deprecated [-Wdeprecated-enum-enum-conversion] 92 | SET_VECTOR_ELT(answer, NRPoint::NUM_POINT_COLS + VAL, rexpr_vals); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRIdTimeInterval.cpp -o NRIdTimeInterval.o In file included from EMRDb.h:11, from NRIdTimeInterval.cpp:1: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/map:62, from EMRDb.h:4: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRIdsDist.cpp -o NRIdsDist.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRImport.cpp -o NRImport.o In file included from EMRTrack.h:17, from NRIdsDist.cpp:4: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/stl_algobase.h:59, from /usr/include/c++/15/algorithm:62, from NRIdsDist.cpp:1: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from EMRDb.h:11, from NRImport.cpp:4: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/cstdlib:46, from /usr/include/c++/15/stdlib.h:36, from NRImport.cpp:1: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRIteratorFilter.cpp -o NRIteratorFilter.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRLogicalTrack.cpp -o NRLogicalTrack.o In file included from EMRDb.h:11, from NRIteratorFilter.cpp:1: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/map:62, from EMRDb.h:4: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from EMRDb.h:11, from NRLogicalTrack.cpp:6: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/cstdlib:46, from /usr/include/c++/15/stdlib.h:36, from NRLogicalTrack.cpp:1: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRLogicalTrackInfo.cpp -o NRLogicalTrackInfo.o In file included from EMRTrack.h:17, from NRTrackExpressionScanner.h:10, from NRLogicalTrackInfo.cpp:4: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/cmath:46, from NRLogicalTrackInfo.cpp:1: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRPoint.cpp -o NRPoint.o In file included from EMRPoint.h:4, from NRPoint.cpp:3: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/cmath:46, from NRPoint.cpp:1: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRQuantiles.cpp -o NRQuantiles.o In file included from EMRTrack.h:17, from NRTrackExpressionScanner.h:10, from NRQuantiles.cpp:4: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/cmath:46, from NRQuantiles.cpp:1: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRScreen.cpp -o NRScreen.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRSummary.cpp -o NRSummary.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRTest.cpp -o NRTest.o In file included from EMRPoint.h:4, from NRPoint.h:4, from NRScreen.cpp:2: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/string:40, from naryn.h:4, from NRScreen.cpp:1: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from EMRTrack.h:17, from NRTrackExpressionScanner.h:10, from NRSummary.cpp:4: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/cmath:46, from NRSummary.cpp:1: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from EMRDb.h:11, from NRTest.cpp:8: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/iostream:40, from NRTest.cpp:6: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRTimeConverter.cpp -o NRTimeConverter.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRTimeInterval.cpp -o NRTimeInterval.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRTrack.cpp -o NRTrack.o In file included from EMRDb.h:11, from NRTrack.cpp:18: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/memoryfwd.h:50, from /usr/include/c++/15/memory:65, from NRTrack.cpp:2: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRTrackCreate.cpp -o NRTrackCreate.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRTrackExpressionScanner.cpp -o NRTrackExpressionScanner.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRTrackExpressionVars.cpp -o NRTrackExpressionVars.o In file included from EMRDb.h:11, from NRTrackCreate.cpp:14: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/cstdlib:46, from /data/gannet/ripley/R/cxx20/include/R.h:39, from NRTrackCreate.cpp:4: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from EMRDb.h:11, from EMRTrackExpressionIterator.h:4, from EMRBeatIterator.h:6, from NRTrackExpressionScanner.cpp:7: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/set:62, from NRTrackExpressionScanner.cpp:4: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from EMRDb.h:11, from NRTrackExpressionVars.cpp:4: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/stl_algobase.h:59, from /usr/include/c++/15/algorithm:62, from NRTrackExpressionVars.cpp:1: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRUtils.cpp -o NRUtils.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c NRVtrack.cpp -o NRVtrack.o In file included from EMRPoint.h:4, from EMRIteratorFilterItem.h:7, from NRIteratorFilter.h:4, from NRVtrack.cpp:1: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/cstdint:40, from EMRIteratorFilterItem.h:5: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c TGLException.cpp -o TGLException.o In file included from EMRPoint.h:4, from NRPoint.h:4, from NRUtils.cpp:2: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/bits/requires_hosted.h:31, from /usr/include/c++/15/string:40, from naryn.h:4, from NRUtils.cpp:1: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c naryn-init.cpp -o naryn-init.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c naryn.cpp -o naryn.o In file included from EMRDb.h:11, from naryn.cpp:27: EMR.h:8:22: warning: ‘std::rel_ops’ is deprecated: use '<=>' instead [-Wdeprecated-declarations] 8 | using namespace std::rel_ops; | ^~~~~~~ In file included from /usr/include/c++/15/limits:49, from naryn.cpp:5: /usr/include/c++/15/bits/stl_relops.h:66:21: note: declared here 66 | namespace rel_ops _GLIBCXX20_DEPRECATED_SUGGEST("<=>") | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/cxx20/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c strutil.cpp -o strutil.o g++ -std=gnu++20 -shared -L/usr/local/lib64 -o naryn.so BinFinder.o BinsManager.o BufferedFile.o EMRDb.o EMRIdTimeInterval.o EMRIteratorFilterItem.o EMRLogicalTrack.o EMRProgressReporter.o EMRTimeConverter.o EMRTimeInterval.o EMRTimeStamp.o EMRTrack.o FileUtils.o NRCovariance.o NRDb.o NRDist.o NRExtract.o NRIdTimeInterval.o NRIdsDist.o NRImport.o NRIteratorFilter.o NRLogicalTrack.o NRLogicalTrackInfo.o NRPoint.o NRQuantiles.o NRScreen.o NRSummary.o NRTest.o NRTimeConverter.o NRTimeInterval.o NRTrack.o NRTrackCreate.o NRTrackExpressionScanner.o NRTrackExpressionVars.o NRUtils.o NRVtrack.o TGLException.o naryn-init.o naryn.o strutil.o -lpthread -shared make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-C++20/naryn/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-C++20/naryn/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-C++20/naryn/src' installing to /data/gannet/ripley/R/packages/tests-C++20/naryn.Rcheck/00LOCK-naryn/00new/naryn/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (naryn)